Gene detail

Detail information of GWHGAAZE025112

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007008721.1	0	Multidrug resistance protein ABC transporter family [Theobroma cacao]
COG	NP_969385.1	9E-170	multidrug ABC transporter permease/ATPase
Swissprot	tr\|Q9M1C7\|AB9C_ARATH	0	ABC transporter C family member 9
trEMBL	tr\|A0A061FKD3\|A0A061FKD3_THECC	0	Multidrug resistance protein ABC transporter family {ECO:0000313\|EMBL:EOY17531.1}
TAIR10	AT3G60160.1	0	multidrug resistance-associated protein 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55372059	55380849	+
GWHAAZE00000007	mRNA	55372059	55380849	+
GWHAAZE00000007	exon	55372059	55374395	+
GWHAAZE00000007	exon	55374507	55374593	+
GWHAAZE00000007	exon	55375281	55375916	+
GWHAAZE00000007	exon	55376671	55376835	+
GWHAAZE00000007	exon	55377021	55377315	+
GWHAAZE00000007	exon	55377756	55377970	+
GWHAAZE00000007	exon	55378717	55379022	+
GWHAAZE00000007	exon	55379654	55379717	+
GWHAAZE00000007	exon	55379809	55380048	+
GWHAAZE00000007	exon	55380722	55380849	+
GWHAAZE00000007	CDS	55372059	55374395	+
GWHAAZE00000007	CDS	55374507	55374593	+
GWHAAZE00000007	CDS	55375281	55375916	+
GWHAAZE00000007	CDS	55376671	55376835	+
GWHAAZE00000007	CDS	55377021	55377315	+
GWHAAZE00000007	CDS	55377756	55377970	+
GWHAAZE00000007	CDS	55378717	55379022	+
GWHAAZE00000007	CDS	55379654	55379717	+
GWHAAZE00000007	CDS	55379809	55380048	+
GWHAAZE00000007	CDS	55380722	55380849	+

Transcript Sequence
>GWHTAAZE025146 TCGAGGCTTTTCCACTTTCCGGCATCATGGCCGGAGCTAAGTTTGCCCTGTTTGTACGAGAACGCCAGCATTGCCCTTCAACTCGGTTTCCTCGGATTCCTATTGCTCCATTTTATTCGAAAATGTGTGCAGTATTCACTCAAAAAGTCAGCAGGGGCAGAGAAGAATTGCCCGGTTGGAGTAAATGTTGGACTCGCTTACAAGGTCAGTCTAGCTTGCTCCATTTTAGTGACAGGGGCTCATTTTACACTGGTGGTGATGCCGCAAAGCGACAATCAAGCTCAGTGTGAATTGACAGCCAAGATCCTCTCGCCAGAGATCATTCAAGTGTTATCGTGGGCCATCACGTTGATCGCAATGTACAAGGTTTTCAAAGAAAAGTACATTAAGTTCCCATGGATACTAAGAGCCTGGTGGGTTTGCAGCTTTTTGCTGTATCTGACTCATGTCACACTCAATGCGCGTCTGATACTGAAAAACCATGACCGCGTTAAATTTCAAGATTGGGTTGACTGTGTTATTCTCCTAGCTTCCACATGCCTAATGGGCGTTTCGATAAAAGGGAAGACGGGTAGGGCCCATGATGACCCAAACGGTCTAGCGGACCCACTTCTCTGTGCGAAAACTGAGAAGGGTTCTGAGGCCACAAGGGAATGTTTATATGGAAAAGCTACTCTTTTACAACTCGTTACATTCTCATGGCTCAATCCGTTGTTTGCGGTTGGGTACAAGAAAGCCCTTAACCAAGATGAAGTACCGGACGTATATGTGAAGGACTCAGCCGAGTTTTTGTCCCATTCTTTCGACGAAAGCTTGAAATATGTCAAGGAGAGAGATGGGACCGAAAACCCATCAATCTACAAGGCTATATATGTATTTATAAGGAAGAAAGCAGCAATAAATGCGTTTTTCGCAGTTATAAATGCCGCTGCATCTTATGTTGGACCGTATCTCATCAATGATCTAGTAGATTTTCTTAGTGAAAAGAACAACCGGAGCTTAGCTAGCGGGTACTTACTTGCATTGGCATTTGTTGGTGCAAAAATGGTCGAGACTGTAGCTCAAAGGCAATGGATCTTTGGGGCCCGCCAGCTCGGCCTTCGGCTAAGAGCGGCACTTATATCTCACATATACAAAAAGGGGCTCGTTTTATCGAGCCAATCTTGCCAAAGCCACACAAGTGGAGAGATAATCAATTATATGAGCGTGGACATACAAAGAATCACCGACTTTATGTGGTACTTGAACACAATCTTCATGTTGCCTATACAAATCTTGTTAGCGATGTACATTCTTCAAACGAATCTAGGGCTGGGATCTGTTGTGGGATTCGCAGCTACTTTAATAGTAATGGCTATAAACATACCGGTTACTCGGTTTCAAAAGGGTTATCAGTCAAAAATCATGGATGCAAAGGATAGTAGAATGAAAGCCACTTCAGAAATTCTCCGAAACATGAAGGCTTTAAAACTTCAAGCATGGGACACTCGGTACGTTAAAAAGCTCGAAAGTTTGCGAAAAATGGAGTATAATTGGCTATGGAAGTCACTTAGATTATCAGCGGTATCTGCTTTTATCTTTTGGGGGTCCCCTGCGTTCATTTCTGTGGCGACTTTCGGCGGGTGTGTCCTTATGAGGGTCCCACTAACAGCAGGCCGTGTCTTATCCGCCTTGGCCACATTTCGAATGCTACAAGATCCTATATACAGCTTACCGGACCTCCTATCAGTTATTGCACAAGGAAAGGTATCTGCGGATAGAGTGGCGTCTTTTCTCCAAGAAGAGGAACTCCAATCGGACGCTGTTCAACACATTCCGCGTGATGAAACAGGGTTTGATGTTGAGATTGAAGGTGGGAAGTTTAGCTGGGATGGCGATATGCGGGTCCCAACTCTTGAGGGGATAGAGTTAAAAGTGAAGAGGGGGATGAAGGTGGCGATATGTGGTACCGTTGGATCGGGAAAGTCTAGTCTACTCTCGAGTATACTAGGAGAAGTGCCAAAGGTAACGGGGACTGTTAAGATCGGGGGGACCAAGGCTTATGTTCCTCAGTCCCCGTGGATACTCACGGGGAATGTTAGAGAAAATATTCTCTTTGGAAATGATTACGATAGGACCAAGTATGAAAGAACAGTTAATGCGTGCGCTTTGATTAAGGATTTTGAGTTATTTTCTACCGGTGATCTAACGGAGATCGGAGAAAGAGGTATAAATATGAGCGGAGGACAAAAGCAGAGGATACAGATAGCCCGTGCAGTTTATGAGGATGCCGATATTTATTTGCTCGATGATCCTTTTAGCGCTGTGGATGCACACACGGGAACACAGCTCTTTGAGGATTGCCTTATGGGGATTCTTAAAAACAAGACTATAATTTATGTTACTCACCAGGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGAATCGCGCAAGCCGGTACATTCCACGAACTGATGAAACAGAACATTGGATTTGAACTTCTAGTTGGAGCTCATAACCAAGCACTAGAATCAGTCTTAATGGTGGAAAGTACAAGCAGGGGAGCAGAAAGTACAACACCCGAAGCACACCCCACTCGAAACCCAGAATCCCAACACACCAAACAGGAGCCCGACCAAAACAGGTGCGGGGAAATTACAGAAAAGGACGGGCGGTTAGTGCATGACGAGGAGAGGGAAAAGGGCAGTACCGGGAAAGAAGTTTACTTATCTTACTTGACCATTGTGAAAGGTGGTTGTTTGGTGCCAATCATAATTCTGGCTCAGTCATCCTTCCAAGTGTTGCAAATAGCCAGTAATTACTGGATGGCCTGGGCTTGTCCAACGGACGAGGGTGCACCGTTAACGGGCATGAACTTCATTTTGCTTGTTTATTCGCTTTTTGCCATTGGGAGTTCCCTTTGTGTTTTATTACGAGCCATGCTTGTGGCTGTAATGGGGCTTTGGACTTCGCAGAAGCTATTTGACAACATGCTGCACAGTGTCCTTCGTGCTCCTATGGCTTTCTTTGATTCAACTCCGGCTGGAAGAATATTAAACCGGGCATCGACTGACCAAAGTGTAGTAGACTTGGAGGTTGCGCAAAGATTGGGTTGGTGCGCTTTCTCTATAATTCAGATTCTCGGGACAATTGCAGTAATGTCGCAAGTAGCATGGGAAGTATTCCTAATATTCATTCCAGTCACAGCCATCTGCATATGGTATCAAAGATATTACATACCTACAGCAAGAGAACTAGCCCGGTTAGAAGGGATACAAAGATCGCCTATCCTCCATCATTTTGCAGAATCACTTTCAGGAGCGGCAACAATCCGAGCTTTTGACCAAAAGAACCGCTTCATTGGCGCAAACCTCTGCCTCGTTGACAGTCACTCAAGGCCTTGGTTTCATAATGTTGCAGCAATGGAATGGCTATCTTTCAGGCTCAACCAGTTATCCAACTTCGTCTTTGCCTCCTCACTAGTCTTGCTTGTCACCCTCCCTGAAGGAATTATTATTCCAAGCATTGCGGGATTGGCAGTGACATATGGAATTAGTTTGAATGTTCAACAAGCTTCAGTTATATGGAATATATGCAATGCAGAAAATAAAATGATATCTGTCGAACGAATTCTTCAGTACTCCCATATTCCTAGTGAAGCAGCACTGATAATTGAAGATTCTAGGCCACCAAATAACTGGCCTGAAACCGGAACAATTAGCTTCACAAATTTGCAGATCCGTTACGCTGAGCATCTTCCATCAGTCTTGAAAAATATTACCTGCACATTTCCAGGAAGGAAGAAAGTAGGTGTGGTTGGTAGAACAGGGAGTGGTAAATCAACCCTCATACAAGCAATCTTCCGAATTGTAGAACCGAGAGAGGGAACTATTATAATTGATGAAGTAGACATATCAAAGATAGGCCTTCATGATCTGAGATCAAGGCTTAGCATCATTCCACAGGACCCAACTATGTTTGATGGAACAGTTAGAGTAAACCTCGACCCACTACACCAGTATTCTGACACTGAAGTTTGGGAGGCTCTAGATAAATGTCAACTAGGAGATGTAGTCCGAGCAAAAGAAGAGAAGCTGGAATCAACGGTGGTTGAAAATGGAGAAAACTGGAGTGTGGGCCAAAGGCAGTTGTTCTGTCTTGGAAGAGCCTTGCTAAAGAAAAGCAGCATTCTTGTTCTAGATGAAGCAACAGCATCCGTTGATTCTGCAACCGATGGAGTGATACAGAAGGTTATTAGCCAAGAGTTTAAGGATCGAACAATTGTCACTATAGCTCACAGGATCCACACCGTGATAGACAGCGATTTTGTTCTCGTCCTTAGTGAAGGAAGGATAGCAGAATATGACACCCCAGCAAAGCTACTGGAAAGAGAGGATTCTTTCTTCTCAAAACTCATAAAAGAGTACTCCTTGAGATCACAAAGTTTCAATGCTTCAGCAACTTCACAAAATTGA

Network for GWHGAAZE025112

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	300	567	8.30E-27
PF00005.28	ABC_tran	632	766	8.30E-19
PF00664.24	ABC_membrane	937	1165	1.00E-31
PF00005.28	ABC_tran	1256	1404	1.30E-29

Protein Sequence

>GWHPAAZE025130
SRLFHFPASWPELSLPCLYENASIALQLGFLGFLLLHFIRKCVQYSLKKSAGAEKNCPVGVNVGLAYKVSLACSILVTGAHFTLVVMPQSDNQAQCELTAKILSPEIIQVLSWAITLIAMYKVFKEKYIKFPWILRAWWVCSFLLYLTHVTLNARLILKNHDRVKFQDWVDCVILLASTCLMGVSIKGKTGRAHDDPNGLADPLLCAKTEKGSEATRECLYGKATLLQLVTFSWLNPLFAVGYKKALNQDEVPDVYVKDSAEFLSHSFDESLKYVKERDGTENPSIYKAIYVFIRKKAAINAFFAVINAAASYVGPYLINDLVDFLSEKNNRSLASGYLLALAFVGAKMVETVAQRQWIFGARQLGLRLRAALISHIYKKGLVLSSQSCQSHTSGEIINYMSVDIQRITDFMWYLNTIFMLPIQILLAMYILQTNLGLGSVVGFAATLIVMAINIPVTRFQKGYQSKIMDAKDSRMKATSEILRNMKALKLQAWDTRYVKKLESLRKMEYNWLWKSLRLSAVSAFIFWGSPAFISVATFGGCVLMRVPLTAGRVLSALATFRMLQDPIYSLPDLLSVIAQGKVSADRVASFLQEEELQSDAVQHIPRDETGFDVEIEGGKFSWDGDMRVPTLEGIELKVKRGMKVAICGTVGSGKSSLLSSILGEVPKVTGTVKIGGTKAYVPQSPWILTGNVRENILFGNDYDRTKYERTVNACALIKDFELFSTGDLTEIGERGINMSGGQKQRIQIARAVYEDADIYLLDDPFSAVDAHTGTQLFEDCLMGILKNKTIIYVTHQVEFLPAADLILVMQNGRIAQAGTFHELMKQNIGFELLVGAHNQALESVLMVESTSRGAESTTPEAHPTRNPESQHTKQEPDQNRCGEITEKDGRLVHDEEREKGSTGKEVYLSYLTIVKGGCLVPIIILAQSSFQVLQIASNYWMAWACPTDEGAPLTGMNFILLVYSLFAIGSSLCVLLRAMLVAVMGLWTSQKLFDNMLHSVLRAPMAFFDSTPAGRILNRASTDQSVVDLEVAQRLGWCAFSIIQILGTIAVMSQVAWEVFLIFIPVTAICIWYQRYYIPTARELARLEGIQRSPILHHFAESLSGAATIRAFDQKNRFIGANLCLVDSHSRPWFHNVAAMEWLSFRLNQLSNFVFASSLVLLVTLPEGIIIPSIAGLAVTYGISLNVQQASVIWNICNAENKMISVERILQYSHIPSEAALIIEDSRPPNNWPETGTISFTNLQIRYAEHLPSVLKNITCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGTIIIDEVDISKIGLHDLRSRLSIIPQDPTMFDGTVRVNLDPLHQYSDTEVWEALDKCQLGDVVRAKEEKLESTVVENGENWSVGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVIQKVISQEFKDRTIVTIAHRIHTVIDSDFVLVLSEGRIAEYDTPAKLLEREDSFFSKLIKEYSLRSQSFNASATSQN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05665	ABCC1	ABC transporters	map02010
		Sphingolipid signaling pathway	map04071
		Vitamin digestion and absorption	map04977

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.224
	SRR3591706	second leaf	55.326
	SRR3591707	mature leaf	14.807
	SRR3591708	Shoot apex	18.052
	SRR3591709	Stem	43.586
	SRR3591710	White floral bud	13.891
	SRR3591711	White flower	18.009
	SRR3591712	Green floral bud	19.920
	SRR3591713	Yellow flower	4.698
SRP173429	SRR8316895	Juvenile bud stage	8.889
	SRR8316896	Juvenile bud stage	12.774
	SRR8316897	Juvenile bud stage	5.703
	SRR8316894	Third green stage	7.191
	SRR8316900	Third green stage	25.672
	SRR8316901	Third green stage	22.798
	SRR8316898	Complete white stage	4.375
	SRR8316899	Complete white stage	22.650
	SRR8316903	Complete white stage	10.761
	SRR8316902	Silver flowering stage	3.217
	SRR8316904	Silver flowering stage	3.729
	SRR8316905	Silver flowering stage	0.659
	SRR8316906	Gold flowering stage	2.200
	SRR8316907	Gold flowering stage	7.642
	SRR8316908	Gold flowering stage	9.326
SRP132670	SRR6706286	Control	24.229
	SRR6706287	Light intensity 50%	23.665
	SRR6706288	Light intensity 20%	22.620
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.353
	CNS0095593	Slightly white alabastrum(diploid) 2	17.060
	CNS0095594	Slightly white alabastrum(diploid) 3	20.490
	CNS0095595	Whole white alabastrum(diploid) 2	28.135
	CNS0095596	Whole white alabastrum(diploid) 3	18.086
	CNS0095597	Whole white alabastrum(diploid) 4	21.583
	CNS0095598	Silvery flower (diploied) 1	32.642
	CNS0095599	Silvery flower (diploied) 2	56.372
	CNS0095600	Silvery flower (diploied) 3	12.721
	CNS0095601	Golden flower (diploid) 1	32.550
	CNS0095602	Golden flower (diploid) 2	18.151
	CNS0095603	Golden flower (diploid) 3	17.214
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.578
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.150
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.960
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.364
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.180
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.091
	CNS0095610	Silvery flower (tetraploid) 1	2.021
	CNS0095611	Silvery flower (tetraploid) 2	13.159
	CNS0095612	Silvery flower (tetraploid) 3	2.113
	CNS0095613	Golden flower (tetraploid) 1	0.579
	CNS0095614	Golden flower (tetraploid) 2	2.064
	CNS0095615	Golden flower (tetraploid) 3	0.382
CRA001975	CRR073297	Stem 1	7.110
	CRR073298	Stem 2	6.195
	CRR073299	Stem 3	4.263
	CRR073300	Leaf 1	20.488
	CRR073301	Leaf 2	14.641
	CRR073302	Leaf 3	11.108
	CRR073303	Juvenile bud 1	10.207
	CRR073304	Juvenile bud 2	13.151
	CRR073305	Juvenile bud 3	11.652
	CRR073306	Third green 1	0.963
	CRR073307	Third green 2	0.886
	CRR073308	Third green 3	1.161
	CRR073309	Second white 1	0.281
	CRR073310	Second white 2	0.465
	CRR073311	Second white 3	0.201
	CRR073312	Silver flowering 1	0.291
	CRR073313	Silver flowering 2	0.689
	CRR073314	Silver flowering 3	0.336
	CRR073315	Gold flowering 1	2.714
	CRR073316	Gold flowering 2	3.905
	CRR073317	Gold flowering 3	1.915
	CRR073318	Tawny withering 1	8.261
	CRR073319	Tawny withering 2	8.363
	CRR073320	Tawny withering 3	9.877