Gene detail

Detail information of GWHGAAZE025043

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284974.1	2.5059E-135	PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Vitis vinifera]
COG	YP_003277280.1	7E-21	2OG-Fe(II) oxygenase
Swissprot	tr\|Q945B6\|AOP1L_ARATH	5E-83	Probable 2-oxoglutarate-dependent dioxygenase AOP1.2
trEMBL	tr\|D7U0Q7\|D7U0Q7_VITVI	9E-136	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36203.3}
TAIR10	AT1G52800.1	2E-85	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	54095287	54097504	+
GWHAAZE00000007	mRNA	54095287	54097504	+
GWHAAZE00000007	exon	54095287	54095666	+
GWHAAZE00000007	exon	54096464	54096788	+
GWHAAZE00000007	exon	54097253	54097504	+
GWHAAZE00000007	CDS	54095287	54095666	+
GWHAAZE00000007	CDS	54096464	54096788	+
GWHAAZE00000007	CDS	54097253	54097504	+

Transcript Sequence
>GWHTAAZE025077 CTAGCCATGGTTTGCCAAACACTGCCTAAGCTTCCAGTTGTGGATTTCACAAAGGAAAATTGGAAGCCAGGCTCAAGTTCATGGCTATTGGCTTGCAAAGATGTGAGGCAAGGACTTGAAGAGTTAGGTTGTTTTGTGGCAATTTATGATAATGTTTCTTTGGAGCTTAATAATGAAGTACTTCTTTCATTGAAAGAGTTGTTTGATCTTCCTTTAGAGACCAAAATGCAAAATAGTTCTCATTTGCCTTTTTGCGGTTATATTGGGCAAATTCCTGTTATTCCTTATTACGAGGGCTTGGATGTTGAAAATGGCACAAGCCTTGAACCTATTCAAAGCTTCACAAATCTCATGTGGCCAAATGGAAACGATCATTTTTGTGAAACTATGCAATCATATTCGAAGCTACTAGCAGAACTAGACCAAATGGTGGCGAAAATGATATTTGAAAGCTATGGTATAATGAATTATTATGACTCACACCTCGAATCATTAGCGTACATGCTTCGAGTGAACAAATATGATGTACCTGAGACGGAGGAGACGACTAATGTTGGTCTTGGAGTTCATACGGACAAGAGCTTCATTTCTGTACTTCACCAAAATCAAGTTAAGGGTTTGGAAGTAAAAACGAAGGACGGCCAATGGATTGACGTTGAGTTCCCTCCTTCATCCTTCATAATCATGGCTGGCGAAGCATTCTCGGCATGGAGCAATGGGAGAGTAGATCCATGCGTGCATAGAGTCACATTAAGCGAAAACAAAGAGAGATATTCAATTGGGAAATTTTCTTATAGAAAGGGAATAACAGAAGTACCTCAAGAGCTAGTGGATGAAGAACACCCTTTACAATTCAAGCCATTTGATTGTTTTGGATTACTTGAATTCTCCCTCACAAAAGAGGGTCTACAAGCCAAGAGTATTGCAAAAGCCTATTGCGGAATTTTAGAGACTTGA

Network for GWHGAAZE025043

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	11	89	2.40E-08
PF03171.21	2OG-FeII_Oxy	168	263	7.50E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.343
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.334
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.746
	SRR3591711	White flower	0.491
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.163
SRP173429	SRR8316895	Juvenile bud stage	0.011
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.092
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.335
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.168
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.386
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.351
	CNS0095595	Whole white alabastrum(diploid) 2	0.419
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.080
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.340
	CNS0095601	Golden flower (diploid) 1	0.128
	CNS0095602	Golden flower (diploid) 2	0.408
	CNS0095603	Golden flower (diploid) 3	0.372
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.134
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.209
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.215
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.046
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.056
	CNS0095610	Silvery flower (tetraploid) 1	0.943
	CNS0095611	Silvery flower (tetraploid) 2	0.555
	CNS0095612	Silvery flower (tetraploid) 3	0.093
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.239
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.098
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.151
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.148
	CRR073319	Tawny withering 2	0.207
	CRR073320	Tawny withering 3	0.156