Gene detail

Detail information of GWHGAAZE025037

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP28818.1	7.59678E-48	hypothetical protein JCGZ_14589 [Jatropha curcas]
COG	YP_001371077.1	6E-11	3-hydroxyisobutyryl-CoA hydrolase
Swissprot	tr\|Q5XF59\|HIBC4_ARATH	2E-39	3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial (Precursor)
trEMBL	tr\|A0A067K1B5\|A0A067K1B5_JATCU	3E-48	Uncharacterized protein {ECO:0000313\|EMBL:KDP28818.1}
TAIR10	AT3G60510.2	2E-32	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	54018956	54022802	+
GWHAAZE00000007	mRNA	54018956	54022802	+
GWHAAZE00000007	exon	54018956	54019084	+
GWHAAZE00000007	exon	54019178	54019258	+
GWHAAZE00000007	exon	54021451	54021519	+
GWHAAZE00000007	exon	54021655	54021718	+
GWHAAZE00000007	exon	54021996	54022057	+
GWHAAZE00000007	exon	54022560	54022670	+
GWHAAZE00000007	exon	54022758	54022802	+
GWHAAZE00000007	CDS	54018956	54019084	+
GWHAAZE00000007	CDS	54019178	54019258	+
GWHAAZE00000007	CDS	54021451	54021519	+
GWHAAZE00000007	CDS	54021655	54021718	+
GWHAAZE00000007	CDS	54021996	54022057	+
GWHAAZE00000007	CDS	54022560	54022670	+
GWHAAZE00000007	CDS	54022758	54022802	+

Transcript Sequence
>GWHTAAZE025071 ATGGAGATGTTCAAGTTGGCAATAAAGCGTTGCATTCGCAGCCATGGCTTCACCTTCAAAAGTATATACAGGAGAAGCCTCAGCTCTCTCGTATCCAACAATGCCCTAGTTGATGATCATGATAGCGTAGTACTAGTTGAAGGCAAGGGTAGTTCTAGAACTGCAATTCTCAATAGACCTTCCCTCCTTAATGCTCTCAACACTTCCATGGGGGCTAGGTTACAAAAGCTGTACAAAGCTTGGGAAGATAATCCCGATATTGGTTTTGTGGCAATGAAGGGCAGTGGCAGGGCATTTTGTGCTGGTGGTGATATTGTTGCTCTCTATCGTTTTATAAATAAAGCTAAAAAGGTCACGGAAAATATGAGGTGTAGTCGTACAGTGTTTGAAAAGTTGGTGGAGAAGAACTTTGTAATGTCTGGTTCATCCCATGCAGGTGATATTGAAAGCTGCAAGGATTTTTTTAGGGCGACATATGGTTTTATATACCTTCTGGGTACTTATTTGAAGCCAAATTATATTGATGTTATAGTGATTCATACCTTGGGACTGAGGGATTAA

Network for GWHGAAZE025037

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	53	171	4.20E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.698
	SRR3591706	second leaf	7.870
	SRR3591707	mature leaf	7.059
	SRR3591708	Shoot apex	14.560
	SRR3591709	Stem	11.560
	SRR3591710	White floral bud	9.326
	SRR3591711	White flower	12.308
	SRR3591712	Green floral bud	14.159
	SRR3591713	Yellow flower	8.611
SRP173429	SRR8316895	Juvenile bud stage	10.128
	SRR8316896	Juvenile bud stage	15.134
	SRR8316897	Juvenile bud stage	6.924
	SRR8316894	Third green stage	6.518
	SRR8316900	Third green stage	11.908
	SRR8316901	Third green stage	13.033
	SRR8316898	Complete white stage	4.323
	SRR8316899	Complete white stage	12.460
	SRR8316903	Complete white stage	7.685
	SRR8316902	Silver flowering stage	4.114
	SRR8316904	Silver flowering stage	8.846
	SRR8316905	Silver flowering stage	3.335
	SRR8316906	Gold flowering stage	11.166
	SRR8316907	Gold flowering stage	12.177
	SRR8316908	Gold flowering stage	8.210
SRP132670	SRR6706286	Control	11.432
	SRR6706287	Light intensity 50%	13.826
	SRR6706288	Light intensity 20%	15.595
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.878
	CNS0095593	Slightly white alabastrum(diploid) 2	8.413
	CNS0095594	Slightly white alabastrum(diploid) 3	7.742
	CNS0095595	Whole white alabastrum(diploid) 2	7.266
	CNS0095596	Whole white alabastrum(diploid) 3	5.543
	CNS0095597	Whole white alabastrum(diploid) 4	6.267
	CNS0095598	Silvery flower (diploied) 1	10.862
	CNS0095599	Silvery flower (diploied) 2	6.081
	CNS0095600	Silvery flower (diploied) 3	7.766
	CNS0095601	Golden flower (diploid) 1	6.318
	CNS0095602	Golden flower (diploid) 2	9.298
	CNS0095603	Golden flower (diploid) 3	8.618
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.209
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.104
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.004
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.740
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.208
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.464
	CNS0095610	Silvery flower (tetraploid) 1	10.097
	CNS0095611	Silvery flower (tetraploid) 2	8.754
	CNS0095612	Silvery flower (tetraploid) 3	5.686
	CNS0095613	Golden flower (tetraploid) 1	6.301
	CNS0095614	Golden flower (tetraploid) 2	8.409
	CNS0095615	Golden flower (tetraploid) 3	6.169
CRA001975	CRR073297	Stem 1	6.365
	CRR073298	Stem 2	6.221
	CRR073299	Stem 3	2.599
	CRR073300	Leaf 1	7.325
	CRR073301	Leaf 2	5.708
	CRR073302	Leaf 3	3.239
	CRR073303	Juvenile bud 1	2.415
	CRR073304	Juvenile bud 2	3.722
	CRR073305	Juvenile bud 3	1.541
	CRR073306	Third green 1	0.877
	CRR073307	Third green 2	0.970
	CRR073308	Third green 3	1.165
	CRR073309	Second white 1	1.741
	CRR073310	Second white 2	2.658
	CRR073311	Second white 3	1.315
	CRR073312	Silver flowering 1	0.649
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	1.247
	CRR073315	Gold flowering 1	1.071
	CRR073316	Gold flowering 2	1.689
	CRR073317	Gold flowering 3	0.544
	CRR073318	Tawny withering 1	3.536
	CRR073319	Tawny withering 2	1.670
	CRR073320	Tawny withering 3	1.467