Gene detail

Detail information of GWHGAAZE025015

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008368470.1	1.0119E-157	PREDICTED: uncharacterized protein LOC103432084 [Malus domestica]
COG	YP_007123062.1	6E-52	CDP-diglyceride synthetase
Swissprot	tr\|O04928\|CDS1_ARATH	3E-13	Phosphatidate cytidylyltransferase
trEMBL	tr\|M5X1D4\|M5X1D4_PRUPE	3E-156	Phosphatidate cytidylyltransferase {ECO:0000256\|RuleBase:RU003938}
TAIR10	AT2G45150.1	2E-113	cytidinediphosphate diacylglycerol synthase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	53546690	53559162	-
GWHAAZE00000007	mRNA	53546690	53559162	-
GWHAAZE00000007	exon	53558917	53559162	-
GWHAAZE00000007	exon	53557785	53557908	-
GWHAAZE00000007	exon	53557604	53557634	-
GWHAAZE00000007	exon	53555113	53555306	-
GWHAAZE00000007	exon	53549364	53549488	-
GWHAAZE00000007	exon	53548948	53549081	-
GWHAAZE00000007	exon	53547723	53547838	-
GWHAAZE00000007	exon	53546690	53546781	-
GWHAAZE00000007	CDS	53558917	53559162	-
GWHAAZE00000007	CDS	53557785	53557908	-
GWHAAZE00000007	CDS	53557604	53557634	-
GWHAAZE00000007	CDS	53555113	53555306	-
GWHAAZE00000007	CDS	53549364	53549488	-
GWHAAZE00000007	CDS	53548948	53549081	-
GWHAAZE00000007	CDS	53547723	53547838	-
GWHAAZE00000007	CDS	53546690	53546781	-

Transcript Sequence
>GWHTAAZE025049 ATGCAATCTCATCCCCTTCTCTCTCACTGCTCTCTGTGCTTGCCAGTCTCGATCTGCTTCTTCTTCCTCATCGTCGAAAACCCTAATTCTCACTCGGCCACTCTCTTTTTCCAATTCCAATTTCAGACTGTTGTCGTCAAGAGGATTTTAAGAGTTCCACGGAACACATTCGTTAGTCGGAATCGGTTTATTACCAGATTGGCCAGACCCGAACTGGACAGTGTTGCCGATGATGGCGGAAAAGAGGAAGTTAACAAAAGCTATAATTCATTAAAGAAGGATGATGATTTAGCTTCAGAGCATCAACAAAAATCGAGTCAGTTGAAGAAAAGGGTTGTCTTTGGACTTGGTATAGGACTTTCTGTTGGAGTTATCTGTGCTCTTATGCCTATTGTCACATTATATGTAGGCCAAATTGATGTTTCAGTGACATCTGCAGCTTTTGTTGTTGCTATGGCACTGCTTTTACAAAGAGGAAAAAATCCTCGTTTTGCTCAGCTCAGTAGTGCCATGTTTGGGCTATTTTATTGTGGATATCTTCCTTGCTTCTGGGTTAAGCTCCGATGCGGACTAGCAGCCCCAGCTTTGAATACCAGAGTGGGAGCTGCATGGCCTGTGCTTCTTGGGGGACAAGCTCAGTGGACAGTGGGTCTTGTGGCCACTTTAATTTCATTCAGCAGCATCATTGCAGCTGATACATTTGCCTTTGTTGGTGGAAAGGCATTTGGTAGAACACCACTTACTAATATTAGTCCTAAGAAGACTTGGGAGGGAGCTCTTGCAGGTTTAGGTGGTTGTATAGCCACTGCGGTCTTATTATCGAAGCTTCTTTGTTGGCCTTCATATATGCTAAGTGCAATACCTTTTGGTGTATTGAACTACTTTGGATCTCTTTTTGGTGACCTAATTGAGTCGATGATCAAACGCGATGCTGGTGTTAAGGACTCGGGCTCTCTCATACCTGGGCACGGTGGAATACTAGATAGGGTGGACAGCTACATTTTTACCGGTGCACTTGTGTACTCATTTGTCAAAACCTTGCTACCACTTTACGGAGTTTGA

Network for GWHGAAZE025015

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01148.21	CTP_transf_1	118	346	1.10E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00981	E2.7.7.41, CDS1, CDS2, cdsA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.465
	SRR3591706	second leaf	13.377
	SRR3591707	mature leaf	17.920
	SRR3591708	Shoot apex	15.044
	SRR3591709	Stem	7.871
	SRR3591710	White floral bud	16.170
	SRR3591711	White flower	28.327
	SRR3591712	Green floral bud	18.347
	SRR3591713	Yellow flower	42.016
SRP173429	SRR8316895	Juvenile bud stage	15.044
	SRR8316896	Juvenile bud stage	19.246
	SRR8316897	Juvenile bud stage	12.328
	SRR8316894	Third green stage	10.071
	SRR8316900	Third green stage	40.036
	SRR8316901	Third green stage	37.354
	SRR8316898	Complete white stage	22.692
	SRR8316899	Complete white stage	61.659
	SRR8316903	Complete white stage	33.725
	SRR8316902	Silver flowering stage	15.074
	SRR8316904	Silver flowering stage	22.018
	SRR8316905	Silver flowering stage	11.502
	SRR8316906	Gold flowering stage	35.551
	SRR8316907	Gold flowering stage	32.752
	SRR8316908	Gold flowering stage	36.040
SRP132670	SRR6706286	Control	37.459
	SRR6706287	Light intensity 50%	37.534
	SRR6706288	Light intensity 20%	43.684
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.234
	CNS0095593	Slightly white alabastrum(diploid) 2	16.850
	CNS0095594	Slightly white alabastrum(diploid) 3	13.157
	CNS0095595	Whole white alabastrum(diploid) 2	15.321
	CNS0095596	Whole white alabastrum(diploid) 3	16.018
	CNS0095597	Whole white alabastrum(diploid) 4	15.099
	CNS0095598	Silvery flower (diploied) 1	16.304
	CNS0095599	Silvery flower (diploied) 2	16.614
	CNS0095600	Silvery flower (diploied) 3	39.639
	CNS0095601	Golden flower (diploid) 1	14.935
	CNS0095602	Golden flower (diploid) 2	30.018
	CNS0095603	Golden flower (diploid) 3	31.446
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.005
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.721
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.900
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.269
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.184
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.881
	CNS0095610	Silvery flower (tetraploid) 1	30.519
	CNS0095611	Silvery flower (tetraploid) 2	34.923
	CNS0095612	Silvery flower (tetraploid) 3	33.144
	CNS0095613	Golden flower (tetraploid) 1	23.289
	CNS0095614	Golden flower (tetraploid) 2	30.895
	CNS0095615	Golden flower (tetraploid) 3	34.562
CRA001975	CRR073297	Stem 1	29.780
	CRR073298	Stem 2	28.729
	CRR073299	Stem 3	26.877
	CRR073300	Leaf 1	49.512
	CRR073301	Leaf 2	45.854
	CRR073302	Leaf 3	48.842
	CRR073303	Juvenile bud 1	50.584
	CRR073304	Juvenile bud 2	58.420
	CRR073305	Juvenile bud 3	50.703
	CRR073306	Third green 1	31.431
	CRR073307	Third green 2	18.423
	CRR073308	Third green 3	26.124
	CRR073309	Second white 1	32.286
	CRR073310	Second white 2	27.482
	CRR073311	Second white 3	27.844
	CRR073312	Silver flowering 1	32.638
	CRR073313	Silver flowering 2	28.613
	CRR073314	Silver flowering 3	25.530
	CRR073315	Gold flowering 1	23.557
	CRR073316	Gold flowering 2	40.018
	CRR073317	Gold flowering 3	21.942
	CRR073318	Tawny withering 1	8.711
	CRR073319	Tawny withering 2	10.251
	CRR073320	Tawny withering 3	9.032