Gene detail

Detail information of GWHGAAZE024999

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009609784.1	1.0101E-147	PREDICTED: Golgi SNAP receptor complex member 1-2 [Nicotiana tomentosiformis]
Swissprot	tr\|O22151\|GOS12_ARATH	8E-137	Golgi SNAP receptor complex member 1-2
trEMBL	tr\|K4AZ42\|K4AZ42_SOLLC	2E-144	Golgi SNAP receptor complex member 1 {ECO:0000256\|PIRNR:PIRNR027109}
TAIR10	AT2G45200.1	9E-106	golgi snare 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	53227255	53233157	+
GWHAAZE00000007	mRNA	53227255	53233157	+
GWHAAZE00000007	exon	53227255	53227462	+
GWHAAZE00000007	exon	53229784	53229989	+
GWHAAZE00000007	exon	53230185	53230274	+
GWHAAZE00000007	exon	53230366	53230419	+
GWHAAZE00000007	exon	53232833	53232962	+
GWHAAZE00000007	exon	53233060	53233157	+
GWHAAZE00000007	five_prime_UTR	53227255	53227329	+
GWHAAZE00000007	CDS	53227330	53227462	+
GWHAAZE00000007	CDS	53229784	53229989	+
GWHAAZE00000007	CDS	53230185	53230274	+
GWHAAZE00000007	CDS	53230366	53230419	+
GWHAAZE00000007	CDS	53232833	53232962	+
GWHAAZE00000007	CDS	53233060	53233157	+

Transcript Sequence
>GWHTAAZE025033 CGGAGAGGAGCAGAAGAATAACAATAAGGAGGAGGAACAATAAACGGATCGGATCCAATCCGTCAGGCAGGAGAAATGGCAGGGGATCCGAGTATCGATCAGGAATTGGGTTGGGAGGAACTGAGAAAAGAGGCTCGCAAAATCGAAGGCGATCTCGATGTTAAACTCTCTTCCTATGCTAAACTCGGCGCTAGGTTTTCACAAGGAGGTTATGTGGATAGTAGTGGACCTGGTTCACCAACTCTTGGGTCGAGCAGATCATGGAAGTCCATGGAAATGGAGATTCAATCGTTGCTTGAGAAGCTACTGGATGTTAATGATTCAATGAGTCGATGTGCTGCATCTGCTGCTCCTACTACTTCAGTTACCCAGAAGCTGGCAAGGCACAGGGATATACTTCATGAGTTTACCCAGGAATTTAGAAGAATCAAGGGAAACATAACTTCAATGAAGGAACATGCAGAGCTTCTCACTTCTGTAAGAGATGATATCAGTGAGTACAAGGCATCTGGGAGCAGCAGGCATGAGAGAGCTGCGATACATGGAAATATAGCTCATATGGATGATGTCATTAGTCAAGCTCAAACCACAAGGGCGGCCTTGGGATCTCAAAGGGCTTTGTTTGGTGATGTCCAAGGCAAAGTGAAGCAACTAGGTGACAAGTTTCCCATTGTCCGAGGACTAATTGGTTCAATTAGAAGGAAGAAATCGAGGGACACACTCATCCTATCTGCAGTCATTGCAGCCTGTACGTTATTTCTTATTATATACTGGCTTTCTAAGTAA

Network for GWHGAAZE024999

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12352.9	V-SNARE_C	151	211	1.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08495	GOSR1, GOS1	SNARE interactions in vesicular transport	map04130

Gene Ontology

GO term	Ontology	Name
GO:0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0000139	cellular_component	Golgi membrane
GO:0005801	cellular_component	cis-Golgi network
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.814
	SRR3591706	second leaf	5.467
	SRR3591707	mature leaf	4.439
	SRR3591708	Shoot apex	5.264
	SRR3591709	Stem	4.318
	SRR3591710	White floral bud	2.910
	SRR3591711	White flower	4.209
	SRR3591712	Green floral bud	8.921
	SRR3591713	Yellow flower	4.855
SRP173429	SRR8316895	Juvenile bud stage	5.372
	SRR8316896	Juvenile bud stage	8.933
	SRR8316897	Juvenile bud stage	7.475
	SRR8316894	Third green stage	4.008
	SRR8316900	Third green stage	14.304
	SRR8316901	Third green stage	12.584
	SRR8316898	Complete white stage	1.285
	SRR8316899	Complete white stage	7.366
	SRR8316903	Complete white stage	3.346
	SRR8316902	Silver flowering stage	0.797
	SRR8316904	Silver flowering stage	1.759
	SRR8316905	Silver flowering stage	0.885
	SRR8316906	Gold flowering stage	4.779
	SRR8316907	Gold flowering stage	4.327
	SRR8316908	Gold flowering stage	6.218
SRP132670	SRR6706286	Control	5.183
	SRR6706287	Light intensity 50%	4.852
	SRR6706288	Light intensity 20%	4.879
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.095
	CNS0095593	Slightly white alabastrum(diploid) 2	9.582
	CNS0095594	Slightly white alabastrum(diploid) 3	15.073
	CNS0095595	Whole white alabastrum(diploid) 2	14.565
	CNS0095596	Whole white alabastrum(diploid) 3	20.671
	CNS0095597	Whole white alabastrum(diploid) 4	14.897
	CNS0095598	Silvery flower (diploied) 1	5.355
	CNS0095599	Silvery flower (diploied) 2	4.590
	CNS0095600	Silvery flower (diploied) 3	2.833
	CNS0095601	Golden flower (diploid) 1	4.655
	CNS0095602	Golden flower (diploid) 2	4.417
	CNS0095603	Golden flower (diploid) 3	3.243
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.457
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.381
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.025
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.766
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.290
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.352
	CNS0095610	Silvery flower (tetraploid) 1	5.814
	CNS0095611	Silvery flower (tetraploid) 2	4.377
	CNS0095612	Silvery flower (tetraploid) 3	4.425
	CNS0095613	Golden flower (tetraploid) 1	5.583
	CNS0095614	Golden flower (tetraploid) 2	5.638
	CNS0095615	Golden flower (tetraploid) 3	4.316
CRA001975	CRR073297	Stem 1	5.651
	CRR073298	Stem 2	6.579
	CRR073299	Stem 3	3.978
	CRR073300	Leaf 1	7.894
	CRR073301	Leaf 2	7.135
	CRR073302	Leaf 3	3.548
	CRR073303	Juvenile bud 1	3.610
	CRR073304	Juvenile bud 2	2.311
	CRR073305	Juvenile bud 3	2.212
	CRR073306	Third green 1	0.336
	CRR073307	Third green 2	0.804
	CRR073308	Third green 3	1.395
	CRR073309	Second white 1	0.443
	CRR073310	Second white 2	2.324
	CRR073311	Second white 3	0.318
	CRR073312	Silver flowering 1	1.895
	CRR073313	Silver flowering 2	1.009
	CRR073314	Silver flowering 3	1.362
	CRR073315	Gold flowering 1	2.461
	CRR073316	Gold flowering 2	3.665
	CRR073317	Gold flowering 3	1.219
	CRR073318	Tawny withering 1	7.005
	CRR073319	Tawny withering 2	4.970
	CRR073320	Tawny withering 3	4.089