Detail information of GWHGAAZE024991


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009628685.10PREDICTED: arginase 1, mitochondrial [Nicotiana tomentosiformis]
COGYP_591193.12E-62agmatinase
Swissprottr|P46637|ARGI1_ARATH0Arginase 1, mitochondrial (Precursor)
trEMBLtr|B9RD97|B9RD97_RICCO0Arginase, putative {ECO:0000313|EMBL:EEF50355.1}
TAIR10AT4G08900.13E-153arginase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5311465553118487-
GWHAAZE00000007mRNA5311465553118487-
GWHAAZE00000007exon5311465553114915-
GWHAAZE00000007exon5311548353115692-
GWHAAZE00000007exon5311607553116208-
GWHAAZE00000007exon5311720653117365-
GWHAAZE00000007exon5311834753118487-
GWHAAZE00000007CDS5311834753118487-
GWHAAZE00000007CDS5311720653117365-
GWHAAZE00000007CDS5311607553116208-
GWHAAZE00000007CDS5311548353115692-
GWHAAZE00000007CDS5311465553114915-
Transcript Sequence

Network for GWHGAAZE024991

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00491.22Arginase622097.70E-30
PF00491.22Arginase2102959.00E-27
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01476E3.5.3.1, rocF, arg Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Arginine biosynthesismap00220
Arginine and proline metabolismmap00330

Gene Ontology

GO term OntologyName
GO:0016813molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.770
SRR3591706second leaf19.167
SRR3591707mature leaf21.017
SRR3591708Shoot apex28.449
SRR3591709Stem23.884
SRR3591710White floral bud34.503
SRR3591711White flower40.619
SRR3591712Green floral bud30.328
SRR3591713Yellow flower42.940
SRP173429 SRR8316895Juvenile bud stage 17.511
SRR8316896Juvenile bud stage 26.778
SRR8316897Juvenile bud stage 13.447
SRR8316894Third green stage 13.077
SRR8316900Third green stage 40.723
SRR8316901Third green stage 36.549
SRR8316898Complete white stage 23.320
SRR8316899Complete white stage 53.688
SRR8316903Complete white stage 29.577
SRR8316902Silver flowering stage13.779
SRR8316904Silver flowering stage17.545
SRR8316905Silver flowering stage8.861
SRR8316906Gold flowering stage 34.627
SRR8316907Gold flowering stage 35.439
SRR8316908Gold flowering stage 21.143
SRP132670SRR6706286Control38.672
SRR6706287Light intensity 50%39.433
SRR6706288Light intensity 20%40.442
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.289
CNS0095593Slightly white alabastrum(diploid) 222.894
CNS0095594Slightly white alabastrum(diploid) 317.895
CNS0095595Whole white alabastrum(diploid) 219.962
CNS0095596Whole white alabastrum(diploid) 320.070
CNS0095597Whole white alabastrum(diploid) 420.065
CNS0095598Silvery flower (diploied) 128.234
CNS0095599Silvery flower (diploied) 224.640
CNS0095600Silvery flower (diploied) 344.213
CNS0095601Golden flower (diploid) 124.339
CNS0095602Golden flower (diploid) 237.748
CNS0095603Golden flower (diploid) 334.025
CNS0095604Slightly white alabastrum(tetraploid) 121.777
CNS0095605Slightly white alabastrum(tetraploid) 219.400
CNS0095606Slightly white alabastrum(tetraploid) 337.519
CNS0095607Whole white alabastrum(tetraploid) 113.582
CNS0095608Whole white alabastrum(tetraploid) 213.734
CNS0095609Whole white alabastrum(tetraploid) 326.240
CNS0095610Silvery flower (tetraploid) 136.516
CNS0095611Silvery flower (tetraploid) 245.340
CNS0095612Silvery flower (tetraploid) 336.604
CNS0095613Golden flower (tetraploid) 127.583
CNS0095614Golden flower (tetraploid) 233.861
CNS0095615Golden flower (tetraploid) 325.544
CRA001975CRR073297Stem 128.196
CRR073298Stem 226.149
CRR073299Stem 330.099
CRR073300Leaf 136.710
CRR073301Leaf 234.661
CRR073302Leaf 335.222
CRR073303Juvenile bud 142.933
CRR073304Juvenile bud 237.252
CRR073305Juvenile bud 354.900
CRR073306Third green 115.422
CRR073307Third green 215.901
CRR073308Third green 313.898
CRR073309Second white 129.518
CRR073310Second white 218.049
CRR073311Second white 317.218
CRR073312Silver flowering 113.900
CRR073313Silver flowering 217.428
CRR073314Silver flowering 315.106
CRR073315Gold flowering 131.098
CRR073316Gold flowering 236.249
CRR073317Gold flowering 331.345
CRR073318Tawny withering 125.121
CRR073319Tawny withering 224.122
CRR073320Tawny withering 324.785