Gene detail

Detail information of GWHGAAZE024947

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP08918.1	0	unnamed protein product [Coffea canephora]
COG	YP_007713204.1	0.00000003	hypothetical protein MMALV_05390
Swissprot	tr\|Q9LE59\|GAUT1_ARATH	0	Polygalacturonate 4-alpha-galacturonosyltransferase
trEMBL	tr\|A0A068UMR9\|A0A068UMR9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313\|EMBL:CDP08918.1}
TAIR10	AT3G61130.1	0	galacturonosyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	52472382	52479440	+
GWHAAZE00000007	mRNA	52472382	52479440	+
GWHAAZE00000007	exon	52472382	52472543	+
GWHAAZE00000007	exon	52472953	52473092	+
GWHAAZE00000007	exon	52474202	52474236	+
GWHAAZE00000007	exon	52474505	52474621	+
GWHAAZE00000007	exon	52474753	52475087	+
GWHAAZE00000007	exon	52476809	52477133	+
GWHAAZE00000007	exon	52477543	52478118	+
GWHAAZE00000007	exon	52479165	52479440	+
GWHAAZE00000007	five_prime_UTR	52472382	52472543	+
GWHAAZE00000007	five_prime_UTR	52472953	52472959	+
GWHAAZE00000007	CDS	52472960	52473092	+
GWHAAZE00000007	CDS	52474202	52474236	+
GWHAAZE00000007	CDS	52474505	52474621	+
GWHAAZE00000007	CDS	52474753	52475087	+
GWHAAZE00000007	CDS	52476809	52477133	+
GWHAAZE00000007	CDS	52477543	52478118	+
GWHAAZE00000007	CDS	52479165	52479440	+

Transcript Sequence
>GWHTAAZE024981 CGGAAATGCAAGGGACTGTAATAGAGCAAAAAGGGAAACTTCTGCCTTCATTTTTCTTCTCTTTCTCACACACATTGCATTCTTTTCCTCTCAAATTTTGCAGTTTTCGATGCTTTTGATATGGACTTCAACTAGCAACATCTCTCCCAAATCCCTACCCTGGTGATCGATGGAGACCGGCAACAGGAACAAAGGCGGTGGTGGATCACGGTTCCCAATTTCGATTGTTGTCTTCCTCCTTCTACTTGCTGTTTGTTTCATTTTCTTAGTGGGAAGGGGACACCACATTACAGCCTCAATTGATCAAAATGATTCTTCAGCCAGTTATAGTAAACAGGTTATTGATGTCATCAAAGACAATACCGATGATTTAGGGGACCTGAGTCTTTATTTTTTCCAAAAATATAATAATGGCTCTGAATCTGTTGATACACCTGTTAAACTAGCAAGAAGGCAATTAAGAGGCAAAAGACGGGTAAAACCTACAGCCGATTTGGTAAAAAGAGATCAAGAAGTTACCGTGAAGCTTGAAAATGCGGCTGTTAAACACTCCAAATCAGTTGACTCTGCAGTCTTGGGGAAATACGGTATTTGGAAGAAAGAAAACGAAAATCAGAACCCTGACTCGACGGTACACTTGATTCGAGATCAAATGATTATGGCAAGGGTATATTCAAGCATTGCAACAATGAAGAACAAGACTGACTTGGTCCAAGAACTAGAGAATCAACTTAAAGAAAGTCAGCATGCTTTAGGAGAAGCAACTGCTGATTCTGATCTAGATGACAGTGCACCCGAGAAAGTCAAATCTATGGGCGTTGTTTTGTCAAAAGCTAAAGAGAAACTGTATGACTGCGAGCTGGTCATTGGAAAGCTGAGAAAAATGCTTGAATCAGCAGATGAGAAGGTCCGGAGCTTGAAAAAACAGAGCACATTCTTGAGCCAGTTAGCCGCCAAGACAATTCCCAATGGAATCCATTGCTTATCGCTGCGTTTAACCATTGAATACAACTTACTTCCACCGGAGAGAAGGAAGTTTCCTAGAAGTGAGAATCTGGAGAATCCAAATCTTTATCATTACGCCCTCTTCTCTGATAATGTCTTGGCTGCCTCGGAACCAGAGAAACACGTATTCCATCTCGTTTCAGATAAATTAAACTTCGGAGCAATGAACATGTGGTTTCTTTTAAACCCACCCGGTAAAGCCACCATCAATGTCGAAAATGTCGACGAATTCATGTGGCTCAACTCCTCCTACTGTCCAGTTCTTCGGCAACTAGAATCTGCTGCCATGAAAGAGTACTACTTCAAGGCCGATCATCATTCCGGCTCTTCTAATCTCAAGTACCGGAACCCTAAGTATCTCTCAATGCTTAATCACCTCAGATTCTATCTCCCACAAGTTTATCCCAAGCTAAATAAGATTCTTTTTCTTGATGATGACATTGTGGTACAAAAGGACTTGACCGGATTATGGTCAGTGGATCTCAAAGGGAATGTGAATGGTGCAGTTGAAACTTGCGGTGAGAGCTTTCACCGGTTTGACAAGTATTTGAATTTCTCGAATCCAAATATTGCAAGAAACTTTGATCCAAATGCCTGTGGTTGGGCTTATGGGATGAATATGTTTGATCTCAAGGAGTGGAAGAAGAAGGATATAACTGGCATATACCACAAGTGGCAAAATATGAATGAAGAGAGAAATCTATGGAAACTTGGGACATTACCACCGGGGTTAATCACATTTTATGGACTCACTTACCCCTTGGACAAATCGTGGCACGTGCTGGGTCTTGGTTATAGTCCGACCGTGAATCAGACTGAAATCGAGAATGCTGCGGTTATACATTATAATGGGAACATGAAACCATGGCTCGAGTTGGCGATGATTAAGTACCGTTCCTACTGGACAAATTACATCATGTTTAACCATCCCTATGTTCGCGGCTGCAACCTAAGCTATTAG

Network for GWHGAAZE024947

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.21	Glyco_transf_8	271	571	4.90E-90

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13648	GAUT	Metabolic pathways	map01100
K13648	GAUT	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.414
	SRR3591706	second leaf	7.216
	SRR3591707	mature leaf	4.714
	SRR3591708	Shoot apex	4.906
	SRR3591709	Stem	3.224
	SRR3591710	White floral bud	25.665
	SRR3591711	White flower	14.516
	SRR3591712	Green floral bud	46.911
	SRR3591713	Yellow flower	12.593
SRP173429	SRR8316895	Juvenile bud stage	15.222
	SRR8316896	Juvenile bud stage	26.570
	SRR8316897	Juvenile bud stage	13.132
	SRR8316894	Third green stage	10.899
	SRR8316900	Third green stage	33.650
	SRR8316901	Third green stage	35.206
	SRR8316898	Complete white stage	4.222
	SRR8316899	Complete white stage	17.787
	SRR8316903	Complete white stage	7.609
	SRR8316902	Silver flowering stage	3.915
	SRR8316904	Silver flowering stage	5.427
	SRR8316905	Silver flowering stage	2.301
	SRR8316906	Gold flowering stage	8.975
	SRR8316907	Gold flowering stage	7.817
	SRR8316908	Gold flowering stage	11.858
SRP132670	SRR6706286	Control	21.877
	SRR6706287	Light intensity 50%	23.908
	SRR6706288	Light intensity 20%	23.661
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.558
	CNS0095593	Slightly white alabastrum(diploid) 2	25.985
	CNS0095594	Slightly white alabastrum(diploid) 3	27.285
	CNS0095595	Whole white alabastrum(diploid) 2	44.281
	CNS0095596	Whole white alabastrum(diploid) 3	52.639
	CNS0095597	Whole white alabastrum(diploid) 4	43.024
	CNS0095598	Silvery flower (diploied) 1	11.975
	CNS0095599	Silvery flower (diploied) 2	11.730
	CNS0095600	Silvery flower (diploied) 3	12.412
	CNS0095601	Golden flower (diploid) 1	10.761
	CNS0095602	Golden flower (diploid) 2	11.945
	CNS0095603	Golden flower (diploid) 3	11.194
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.453
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.878
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.263
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.382
	CNS0095608	Whole white alabastrum(tetraploid) 2	57.959
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.457
	CNS0095610	Silvery flower (tetraploid) 1	15.073
	CNS0095611	Silvery flower (tetraploid) 2	14.859
	CNS0095612	Silvery flower (tetraploid) 3	20.221
	CNS0095613	Golden flower (tetraploid) 1	8.457
	CNS0095614	Golden flower (tetraploid) 2	10.605
	CNS0095615	Golden flower (tetraploid) 3	12.951
CRA001975	CRR073297	Stem 1	14.865
	CRR073298	Stem 2	16.967
	CRR073299	Stem 3	8.724
	CRR073300	Leaf 1	25.323
	CRR073301	Leaf 2	18.014
	CRR073302	Leaf 3	10.181
	CRR073303	Juvenile bud 1	18.302
	CRR073304	Juvenile bud 2	15.871
	CRR073305	Juvenile bud 3	5.894
	CRR073306	Third green 1	7.916
	CRR073307	Third green 2	7.106
	CRR073308	Third green 3	5.924
	CRR073309	Second white 1	4.657
	CRR073310	Second white 2	7.261
	CRR073311	Second white 3	5.311
	CRR073312	Silver flowering 1	10.720
	CRR073313	Silver flowering 2	9.166
	CRR073314	Silver flowering 3	4.373
	CRR073315	Gold flowering 1	10.233
	CRR073316	Gold flowering 2	5.961
	CRR073317	Gold flowering 3	5.726
	CRR073318	Tawny withering 1	5.528
	CRR073319	Tawny withering 2	7.611
	CRR073320	Tawny withering 3	6.375