Gene detail

Detail information of GWHGAAZE024891

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273843.1	0	PREDICTED: beta-amylase 7 [Vitis vinifera]
COG	YP_004639885.1	7E-48	thermophilic beta-amylase
Swissprot	tr\|O80831\|BAM7_ARATH	0	Beta-amylase 7
trEMBL	tr\|F6I626\|F6I626_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62422.1}
TAIR10	AT2G45880.1	0	beta-amylase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51345090	51371850	+
GWHAAZE00000007	mRNA	51345090	51371850	+
GWHAAZE00000007	exon	51345090	51345469	+
GWHAAZE00000007	exon	51347432	51347509	+
GWHAAZE00000007	exon	51347644	51347847	+
GWHAAZE00000007	exon	51348331	51348525	+
GWHAAZE00000007	exon	51350100	51350264	+
GWHAAZE00000007	exon	51350725	51350985	+
GWHAAZE00000007	exon	51351349	51351567	+
GWHAAZE00000007	exon	51352438	51352657	+
GWHAAZE00000007	exon	51365774	51366084	+
GWHAAZE00000007	exon	51367166	51367447	+
GWHAAZE00000007	exon	51368105	51368182	+
GWHAAZE00000007	exon	51368323	51368526	+
GWHAAZE00000007	exon	51369115	51369309	+
GWHAAZE00000007	exon	51369614	51369778	+
GWHAAZE00000007	exon	51369984	51370244	+
GWHAAZE00000007	exon	51370461	51370682	+
GWHAAZE00000007	exon	51371599	51371850	+
GWHAAZE00000007	five_prime_UTR	51345090	51345217	+
GWHAAZE00000007	CDS	51345218	51345469	+
GWHAAZE00000007	CDS	51347432	51347509	+
GWHAAZE00000007	CDS	51347644	51347847	+
GWHAAZE00000007	CDS	51348331	51348525	+
GWHAAZE00000007	CDS	51350100	51350264	+
GWHAAZE00000007	CDS	51350725	51350985	+
GWHAAZE00000007	CDS	51351349	51351567	+
GWHAAZE00000007	CDS	51352438	51352657	+
GWHAAZE00000007	CDS	51365774	51366084	+
GWHAAZE00000007	CDS	51367166	51367447	+
GWHAAZE00000007	CDS	51368105	51368182	+
GWHAAZE00000007	CDS	51368323	51368526	+
GWHAAZE00000007	CDS	51369115	51369309	+
GWHAAZE00000007	CDS	51369614	51369778	+
GWHAAZE00000007	CDS	51369984	51370244	+
GWHAAZE00000007	CDS	51370461	51370682	+
GWHAAZE00000007	CDS	51371599	51371850	+

Transcript Sequence
>GWHTAAZE024925 CTTTCTCACCCTCACCTTCAGTTGTTCACTTTTTAGCTGCACACTCCACAATATACAAATAAATAAATAGTAACCTCACACATAGAATTGAAGAAGGAAAAAAAAACAGAAAAGAAAGAGGATTCAAAATGGCGATTTCAACTGTTCAAGCTTTTCAGATAGCAGCAAAATGGCCACCGCCTAATGCCCTATTTTCTTCCCCAATGGCTTCTTTTTCCTCGCATTATGTTCCATCACAGATCAATTCCGGTAGATTCAGATTATTACGGTTAATTGACTCGAGTGCTAGTAGGATTTCGGTATTGGTGAGAAATAGAGCCAAGAAAATTGAGGATCATCCAATTGCTGGTGATTTAGTGGATTCCGCTGTTGATGAGCAGGCTGTGGACATGGCCCCAAAGTTGCCGGAGCGAGATTTTTCTGGCACCCCAAATGTTCCTGTATACGTTATGTTACCGCTGGGCATCATCAATATGGAGTGTGAACTGGTTGATCCTGATGATCTGATGAATCAGTTGAGGATCTTGAAGTCAGTTAATGTTGATGGAGTTATGGTTGACTGCTGGTGGGGGATAGTAGAGGCACATGCTCCACAGCAATATAACTGGAATGGCTACAAGAGGCTCTTTCAGATTGTGCGTGAGCTTGACCTCAAGTTACAGGTTGTTATGTCATTTCATGAATGCGGAGGCAATGTTGGTGATGATGTTCATATTCCATTACCTGGATGGGTGACAGAAATTGGTCAAAGCAACGGTGACATATTTTTCACCGACAGAGAAGGAATACGTAACTTTGAATGCCTCACCTGGGGAATTGACAAGGAAAGAGTTTTGAGAGGGCGTACTGCTGTTGAGGTTTACTTTGACTACATGAGAAGTTTCCGGGTAGAATTTGACGAGTTCTTTGAGGATGGAATCATATCTGAGATTGAGATTGGACTAGGTCCATGTGGGGAATTACGTTACCCCTCTTACCCTGCAAAACGTGGTTGGAAATATCCTGGTATCGGCGAATTCCAGTGCTATGATAAGTATTTGATGAAGAGTCTGAAGAGTGCGGCTGAAGCAAGGGGACACTCATTTTGGGGTAAAGGCCCCGATAATGCAGGTTCTTATAATTCCCAGCCACATGAAACCAGGTTCTTTTGTGATGGAGGTGATTATGATAGCTATTATGGCAGATTCTTCCTTCCTTGGTACTCTCGGGTACTGATTGATCATGGCGATCGGGTACTTGCCCTCGCAAATTTGGCTTTTGAAGGCACCCACATTGCTGCAAAGCTATCTGGTATTCATTGGTGGTACAAGACAGCTAGCCATGCTGCAGAATTAACTGCTGGGTTTTATAATCCAGCCAATCGGGATGGTTATGCTCCAATTGCATCCATGTTAAAGAAGCACGAGGCTGCTCTAAACTTCACATGTGTTGAATTGCGTACATTGGACCAGCATGAGGATTTTCCCGAGGCACTGGCAGACCCCGAGGGATTAGTTTGGCAGGTGTTAAATGCGGCCTGGGATGTGAACATACCTGTTGCGAGTGAGAATGCACTTAGTTGCCATGACAGAGAAGGCTATAACAAAATACTGGAAAACGCGAAGCCCCTTAATGATCCAGATGGTAGGCATTTATCTGCTTTTACGTACCTCAGGCTCAGCCCAGTTCTCATGGAGACACACAATTTCAAGGAGTTTGAACGATTCGTCAAGAGAATGCATGTATTGGTAGGTGGTGATGGTGGACTTGCAACTAACAGTAATAATCAGTTTCAACATCAACAGCAATTTCAAGAGCAACTGACTCCCCAAGGAAGTACTCGAAGGTGTAGACCATTAGAAGAAAAGGAGAGAACAAAGCTACGAGAGAGACAGAGGAGGGCAATTACTGCAAAGATTTTGGCAGGGCTTAGAAGGCATGGGAATTATAACCTTAGGGTTAGAGCTGATATTAATGATGTGATTGCGGCCTTGGCAAGGGAAGCTGGTTGGGTTGTTCTTCCCGATGGAACTACATTTCCTTCCAGATCGCAGGTCCCAAGACCTGCTGGTGGCACCACGTCTACTCCGGCGGTGGCTCCATCATCTTCACATATGCCACTGCCACAAACCCCACCTGCTTCCTTGCAAGGAATCTCTTCCGGCTATCAGAATATGGTGGAGTATAATGCATGCCAAATGAAAGGTGTTTTTGTGCCCTCTTCATCCCCTTACGACATACCCACAAATGTTGGAGCTCATACTTCAGCTATGATGGAAGAAGAGGGAGATACTCAGAATGATCCTCTTATTGGGGGCTCTGTTGATAACAGGCAGGTTGTTGACATGCCCCCAAAGCTACAGGAGCGAGATTTTGCTGGCACCCCTCGTGTTCCTGTTTATGTGATGCTACCTTTGGGTGTCATCAGTATGAAGTGTGAGCTTGTCGATCCCGACAGCCTCCTAAAGCAACTTAGAGTGTTGAAATCGATCAATGTTGATGGTGTTATGGTTGATTGCTGGTGGGGTATAGTAGAAGCACATATTCCGCAAGAGTATAACTGGAGTGGCTACAAGAGGCTGTTTCAAATCGTGCGTGAACTTAAACTAAAGTTACAGGTGGTAATGTCCTTCCATGAATGTGGAGGCAATGTTGGTGATGATGTTTGTATTCCACTGCCTCATTGGGTGGCAGAAATTGGTCGTAGCAATCCCGATATATTTTTCACAGATAGAGCGGGGAGACGCAACCCAGAATGTCTTTCGTGGGGAATTGACAAGGAACGTGTTTTAAGAGGCCGGACTGCCGTTGAGGTTTACTTTGACTACATGAGAAGCTTTCGGGTTGAATTTGATGAGTTCTTTGAGGATGGTATCATCTCTATGATTGAAATTGGATTAGGTCCATGTGGTGAGTTACGTTACCCATCTAATCCAGTAAAACATGGTTGGAGATATCCAGGTGTTGGTGAGTTCCAGTGTTATGATCAGTATTTGTTGAAAAGCCTGAGGAAGGCAGCTGAAACAAGGGGACACTCCTTTTGGGCACGAGGACCAGATAATGCAGGTTCCTATAGTTCCCGACCAAACGAAACCGGATTTTTTTGTGATGGAGGTGATTATGACGGCTATTATGGCAGGTTCTTCCTCAATTGGTATTCTCAATTTTTAGTTAGCCATGGGGATCGGGTGCTTTCTCTTGCAAAGTTAGCTTTCGAAGGCACTTGCATTGCTGCTAAGCTATCAGGTATTCATTGGTGGTACAAAACCGCCAGCCATGCTGCCGAATTAACCGCTGGCTTTTACAACTCATGCAACCGTGATGGTTATGCTGCAACTATGGCAATGTTGAACAAACACGGGGCCGCCTTGAACTTCATAAATGCTGAATTTGGGGGGCCACTAGACCCAAGCGTGGATTTTTCAGAGGCACTGTCAGATCCTGACGGATTAGCCTGGCAAGTGCTGAATGCTGCTTGGGATGCTTGTATACCAGTTGCAAGTGAGAACTCTCTTCTTTGCCTCGACAAAGAAAGCTATAACCAACTATTAGAAAAGGCCAAGCCCTTGAATGATCCAGATGGGAGGCATTTTTCAGCTTTTACCTACCTTAGGCTCTGCCCGCTTCTAATGGAAAGACAAAACTTCGTCGAGTTCGAACGATTTGTTAAGAGAATGCACGGTAACCATTGGAAACACTTTCTCTTCACTTAA

Network for GWHGAAZE024891

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01373.18	Glyco_hydro_14	106	526	2.60E-112
PF05687.14	BES1_N	564	696	2.60E-36
PF01373.18	Glyco_hydro_14	751	1172	5.60E-101

Protein Sequence

>GWHPAAZE024909
MAISTVQAFQIAAKWPPPNALFSSPMASFSSHYVPSQINSGRFRLLRLIDSSASRISVLVRNRAKKIEDHPIAGDLVDSAVDEQAVDMAPKLPERDFSGTPNVPVYVMLPLGIINMECELVDPDDLMNQLRILKSVNVDGVMVDCWWGIVEAHAPQQYNWNGYKRLFQIVRELDLKLQVVMSFHECGGNVGDDVHIPLPGWVTEIGQSNGDIFFTDREGIRNFECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFDEFFEDGIISEIEIGLGPCGELRYPSYPAKRGWKYPGIGEFQCYDKYLMKSLKSAAEARGHSFWGKGPDNAGSYNSQPHETRFFCDGGDYDSYYGRFFLPWYSRVLIDHGDRVLALANLAFEGTHIAAKLSGIHWWYKTASHAAELTAGFYNPANRDGYAPIASMLKKHEAALNFTCVELRTLDQHEDFPEALADPEGLVWQVLNAAWDVNIPVASENALSCHDREGYNKILENAKPLNDPDGRHLSAFTYLRLSPVLMETHNFKEFERFVKRMHVLVGGDGGLATNSNNQFQHQQQFQEQLTPQGSTRRCRPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQVPRPAGGTTSTPAVAPSSSHMPLPQTPPASLQGISSGYQNMVEYNACQMKGVFVPSSSPYDIPTNVGAHTSAMMEEEGDTQNDPLIGGSVDNRQVVDMPPKLQERDFAGTPRVPVYVMLPLGVISMKCELVDPDSLLKQLRVLKSINVDGVMVDCWWGIVEAHIPQEYNWSGYKRLFQIVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDRAGRRNPECLSWGIDKERVLRGRTAVEVYFDYMRSFRVEFDEFFEDGIISMIEIGLGPCGELRYPSNPVKHGWRYPGVGEFQCYDQYLLKSLRKAAETRGHSFWARGPDNAGSYSSRPNETGFFCDGGDYDGYYGRFFLNWYSQFLVSHGDRVLSLAKLAFEGTCIAAKLSGIHWWYKTASHAAELTAGFYNSCNRDGYAATMAMLNKHGAALNFINAEFGGPLDPSVDFSEALSDPDGLAWQVLNAAWDACIPVASENSLLCLDKESYNQLLEKAKPLNDPDGRHFSAFTYLRLCPLLMERQNFVEFERFVKRMHGNHWKHFLFT

Gene family

Gene family	subfamily
Transcription Factors Family	BES1

KEGG pathway

KO	Enzyme	pathway	mapID
K01177	E3.2.1.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0000272	biological_process	polysaccharide catabolic process
GO:0016161	molecular_function	beta-amylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.449
	SRR3591706	second leaf	11.063
	SRR3591707	mature leaf	9.786
	SRR3591708	Shoot apex	22.538
	SRR3591709	Stem	12.222
	SRR3591710	White floral bud	12.995
	SRR3591711	White flower	14.512
	SRR3591712	Green floral bud	14.245
	SRR3591713	Yellow flower	12.957
SRP173429	SRR8316895	Juvenile bud stage	16.610
	SRR8316896	Juvenile bud stage	21.235
	SRR8316897	Juvenile bud stage	12.930
	SRR8316894	Third green stage	5.760
	SRR8316900	Third green stage	14.988
	SRR8316901	Third green stage	13.454
	SRR8316898	Complete white stage	5.054
	SRR8316899	Complete white stage	15.163
	SRR8316903	Complete white stage	9.354
	SRR8316902	Silver flowering stage	4.135
	SRR8316904	Silver flowering stage	6.968
	SRR8316905	Silver flowering stage	2.775
	SRR8316906	Gold flowering stage	8.518
	SRR8316907	Gold flowering stage	8.521
	SRR8316908	Gold flowering stage	10.287
SRP132670	SRR6706286	Control	10.906
	SRR6706287	Light intensity 50%	12.236
	SRR6706288	Light intensity 20%	12.181
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.744
	CNS0095593	Slightly white alabastrum(diploid) 2	15.156
	CNS0095594	Slightly white alabastrum(diploid) 3	12.674
	CNS0095595	Whole white alabastrum(diploid) 2	12.653
	CNS0095596	Whole white alabastrum(diploid) 3	9.028
	CNS0095597	Whole white alabastrum(diploid) 4	9.574
	CNS0095598	Silvery flower (diploied) 1	15.460
	CNS0095599	Silvery flower (diploied) 2	18.923
	CNS0095600	Silvery flower (diploied) 3	16.060
	CNS0095601	Golden flower (diploid) 1	15.865
	CNS0095602	Golden flower (diploid) 2	15.971
	CNS0095603	Golden flower (diploid) 3	14.177
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.299
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.817
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.893
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.784
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.865
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.205
	CNS0095610	Silvery flower (tetraploid) 1	15.748
	CNS0095611	Silvery flower (tetraploid) 2	14.441
	CNS0095612	Silvery flower (tetraploid) 3	16.610
	CNS0095613	Golden flower (tetraploid) 1	9.174
	CNS0095614	Golden flower (tetraploid) 2	12.512
	CNS0095615	Golden flower (tetraploid) 3	7.382
CRA001975	CRR073297	Stem 1	20.108
	CRR073298	Stem 2	18.221
	CRR073299	Stem 3	13.156
	CRR073300	Leaf 1	20.110
	CRR073301	Leaf 2	20.440
	CRR073302	Leaf 3	12.703
	CRR073303	Juvenile bud 1	14.017
	CRR073304	Juvenile bud 2	10.162
	CRR073305	Juvenile bud 3	15.783
	CRR073306	Third green 1	5.159
	CRR073307	Third green 2	4.529
	CRR073308	Third green 3	5.077
	CRR073309	Second white 1	5.106
	CRR073310	Second white 2	6.487
	CRR073311	Second white 3	6.200
	CRR073312	Silver flowering 1	5.308
	CRR073313	Silver flowering 2	3.928
	CRR073314	Silver flowering 3	4.497
	CRR073315	Gold flowering 1	6.827
	CRR073316	Gold flowering 2	12.868
	CRR073317	Gold flowering 3	5.164
	CRR073318	Tawny withering 1	10.806
	CRR073319	Tawny withering 2	8.519
	CRR073320	Tawny withering 3	9.559