Gene detail

Detail information of GWHGAAZE024849

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011037250.1	1.4973E-177	PREDICTED: hevamine-A-like [Populus euphratica]
COG	YP_005529523.1	8E-11	chitinase
Swissprot	tr\|P51614\|CHIT3_VITVI	3E-143	Acidic endochitinase (Precursor)
trEMBL	tr\|F6I675\|F6I675_VITVI	4E-180	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62471.1}
TAIR10	AT5G24090.1	1E-105	chitinase A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50605780	50606679	+
GWHAAZE00000007	mRNA	50605780	50606679	+
GWHAAZE00000007	exon	50605780	50606679	+
GWHAAZE00000007	CDS	50605780	50606679	+

Transcript Sequence
>GWHTAAZE024883 ATGGTCTTCAAATCAGCAGCATCAATGGCTGTACTTCTCCCATTTATACTCTTAGCCCTAGCACCCGGTTCTGATGCCGGTGGCATTTCAATCTATTGGGGTCAAAATGGAAACGAGGGCACATTGGCCGAGACTTGCGCCACAGGGAACTATCGTTTCGTAAACATTGCATTTCTTCCCACATTTGGCAACGGCCAAACTCCGATGATAAATCTTGCAGGTCATTGTGATCCTTACAGCAATGGCTGCACCAAAATAAGCCCCGACATAAAATCATGCCAAGCCAAAGGAATCAAGGTGATGCTTTCGATTGGAGGTGGGGCTGGTAGCTATTCTCTCACCTCGGCCAATGATGCTAAGCAAGTCGCTATTTATCTTTGGAATAACTTCTTGGGAGGTCGGTCCAGTTCTCGGCCTTTAGGGGACGCAGTTTTGGACGGGATTGACTTTGATATCGAAGGAGGAAGTCCACTACACTGGGATGACCTGGCTAGGTACCTCTCAGCTTATAGCAAGGTGGGTAAGAAGGTTTACTTAACCGCGGCTCCCCAATGCCCTTATCCAGATGCATGGGTTGGGGGTGCCCTTAAGACAGGCCTTTTTGACTATGTTTGGGTACAGTTCTACAATAATCCTCCTTGCCAGTACAATTCCGGGGATATAACTGACATTAAAGATGCGTGGAAGCAGTGGACTACTGATATCCCAGCGGCGAAGATCTTCCTAGGGTTACCAGCAGCTCCAGCGGCAGCAGGGAGTGGGTTCATTCCGGTGGCGGATCTTACTTCTAAAGTGCTTCCGGCACTCAAGAGTTCAGCCAAATATGGAGGTGTAATGCTATGGTCTAAGTACTATGATGATCAAAGTGGATATAGTTCTTCCATTAAGAGCCATGTGTAG

Network for GWHGAAZE024849

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00704.29	Glyco_hydro_18	30	285	8.70E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.107
	SRR3591712	Green floral bud	0.281
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.048
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.067
	SRR8316900	Third green stage	0.272
	SRR8316901	Third green stage	0.076
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.650
	SRR8316904	Silver flowering stage	0.147
	SRR8316905	Silver flowering stage	0.311
	SRR8316906	Gold flowering stage	0.606
	SRR8316907	Gold flowering stage	0.287
	SRR8316908	Gold flowering stage	0.284
SRP132670	SRR6706286	Control	0.055
	SRR6706287	Light intensity 50%	0.100
	SRR6706288	Light intensity 20%	0.141
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.079
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.088
	CNS0095595	Whole white alabastrum(diploid) 2	0.098
	CNS0095596	Whole white alabastrum(diploid) 3	0.081
	CNS0095597	Whole white alabastrum(diploid) 4	0.531
	CNS0095598	Silvery flower (diploied) 1	0.387
	CNS0095599	Silvery flower (diploied) 2	1.031
	CNS0095600	Silvery flower (diploied) 3	0.527
	CNS0095601	Golden flower (diploid) 1	0.212
	CNS0095602	Golden flower (diploid) 2	0.279
	CNS0095603	Golden flower (diploid) 3	0.354
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.076
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.295
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.122
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.122
	CNS0095610	Silvery flower (tetraploid) 1	0.417
	CNS0095611	Silvery flower (tetraploid) 2	0.206
	CNS0095612	Silvery flower (tetraploid) 3	0.348
	CNS0095613	Golden flower (tetraploid) 1	1.906
	CNS0095614	Golden flower (tetraploid) 2	0.465
	CNS0095615	Golden flower (tetraploid) 3	0.453
CRA001975	CRR073297	Stem 1	0.072
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.150
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.001
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.024
	CRR073314	Silver flowering 3	0.238
	CRR073315	Gold flowering 1	0.001
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.070
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000