Gene detail

Detail information of GWHGAAZE024808

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010661962.1	PREDICTED: uncharacterized protein LOC100255258 isoform X3 [Vitis vinifera]
trEMBL	tr\|A0A061DUG0\|A0A061DUG0_THECC	Transducin family protein / WD-40 repeat family protein, putative isoform 1 {ECO:0000313\|EMBL:EOX95671.1}
TAIR10	AT2G46560.1	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	49865901	49882791	+
GWHAAZE00000007	mRNA	49865901	49882791	+
GWHAAZE00000007	exon	49865901	49866320	+
GWHAAZE00000007	exon	49866411	49867838	+
GWHAAZE00000007	exon	49868281	49868337	+
GWHAAZE00000007	exon	49875660	49876085	+
GWHAAZE00000007	exon	49877506	49877729	+
GWHAAZE00000007	exon	49878813	49878946	+
GWHAAZE00000007	exon	49879465	49879722	+
GWHAAZE00000007	exon	49879810	49879988	+
GWHAAZE00000007	exon	49882687	49882791	+
GWHAAZE00000007	CDS	49865901	49866320	+
GWHAAZE00000007	CDS	49866411	49867838	+
GWHAAZE00000007	CDS	49868281	49868337	+
GWHAAZE00000007	CDS	49875660	49876085	+
GWHAAZE00000007	CDS	49877506	49877729	+
GWHAAZE00000007	CDS	49878813	49878946	+
GWHAAZE00000007	CDS	49879465	49879722	+
GWHAAZE00000007	CDS	49879810	49879988	+
GWHAAZE00000007	CDS	49882687	49882791	+

Transcript Sequence
>GWHTAAZE024842 ATGACGGATCTATTTGCTCGTTTTAAGCTTGAAGCTTTGGAGTGCTATTCGTCTTCTCAGAGCATCTTTGCTGGTCTGGATCAAGGAAGTGCATCTGATACTGCAAATACTGAACCTCTGAATGAAATGCTGAAGCCATACCTAGGTACTTCTTCCTCAAACTGGATATCAGATGACGTGGCCTCTAATTTGGAGTCGCATGCTAAAGTAGGTTTGGCAATGCAATACATCAACAAATTGTTAAGAGAGCATCCGAGCTGGCCCCACACCAATATGGCATCTCCTCCACCACGTGTTTACTCTGAGACTGAGCTTCAACAGTACAAGATATTACTTGGAAACTTTCAGCATATGTTATCTTCACGGCTTGCATATTTCGACCAGAAGTTTTCTTTGATTCCTCTAAGGCTAATCAACATGATTCTAATTTCCTTGTGCAATAATGGGTTGGTGTTTATTGGTTACCATGTATTGCTATGCTGTACTTCTAAAGATCCCTCTCAAGAAAAAGGCAACGCAGCAGATGGGCCTTTATTATATCCTAACATTCCCAGACTCCTTCTGAAGGCTACTGAGGCAATGTCCTATTTATTTTCAAGATACATGGCTTCCAGTATCATAACTTGCTCCCACTTCGAATCACGTCCCACAAAGAGAGACATCACTTGTGAAAATAGATTTGGCTGGTTGGTTGCTTGGGTTTTTTACATGCAGGGTCTTGTACAGTCACTGTGGAGTCTAAGAGCTGCATTCAAGTTGTTTTCTGATTTTTGTGCTGAGGATTTCATCAAGATTCCTTTTACTGTTCTTGATTTATCTGAATATTATATCTACTTCGCTTCAGCTTGGCTGCAACAGAATTTTAAAGGTCTCATTATGGTTGCAAAACCTCTTTTGGTTAAACATACCAATGGTGAGACTCCTTGTGAAATCAGCATGGAAGACCTGAGTAAATTTCTTTGCCAAATGGCAGAGTTGCTGACTGACAATTTGTCACTTGATGCTGTTGGAGATGCAAGTCAGATTACTAAACCAATGCAACATGAACATGTTAGAGATATAATGCATTCAATCCCTGAAGATGAGAGATGGAAAATCATAGGGGCCTCTTTGTGGGGCCACATGTCCGATTTTCTTATGCATCACCTGAATTCCTTGCCTGAAAAACTTGATGAAAATTACCCATTTTGTCCCCCATGCAGACTTCCCTCCTTTGTTTCTGATTCTACTAGATCAGAGCTTGATAGCAATAACACAGAAACAAAGATTGAGCTTGTTTCTGTGGTTTTGGCCAGGTTACTAAAGATCACACTTTCGCATGTTTCTTCTTATTTTGAAAAGCAACTTGCTTTGTTCCTGCTGCAGAAAATAAGGGATAGGTCAAGCTCACCTGCTATTTTATGGTTAGAAGAATTTAGCCCAACCCAGCCCGAAGCTCACAATGAGCATTTTCACGGTTTAGAGAATCCAAACACGTCGTGCAATGGAACTGAATTATCAGCCACTGAAGTATTATGGGATATGTGTGCTGATCCTAAAATAATACGTGGATGTTTTGGACAAGGAGATTCAAAGTGGACTCAATATATTAATCTCAAGGACAATAAAGGATGGAGTGACGTATATATAAGCGTTGTGGGGGAGTGTGAAACTGAGGAAACTTTCAATTGCGAAGGTGGTCTTGGCAGTAGATCTACTACTTGTAGTGTGGTTGGATCTCCTGTTGGGGATCCATCTCTGGATAATCAGTCTTTCCTAAGTTCTGGGAAAGATACAACTTCTAAGAAGAAAGTTATGCCATTCCACAATCCTAAAGAGATATTTAAGAGAAACGGAGAGCTTTTAGAGGCATTGTGCATCAACTCTATTGATCAACAGCAAGCTGTGCTTGCAAGCAACAGAAAGGGGATAATATTTTTTGACTGGGAAGATGGGCTACCTTCTATAAACACATCAGATTATATATGGACCAATGCTGATTGGCCACATGATGGGTGGGCTGGATCTGAATCTACCCCAGTTCCTACCTGCGTTTCTCCTGGGGTTGGTCTTGGAAGCAAGAAAGGTACCCACCTTGGGTTGGGTGGAGCCACCCTTGGTGTAGATTCTTTGGCAAGACCAGTGAGAGACTTTACGGGTGGTACAGTAGGAATTTCAAGTTATGCAAATGTGGGTGCATCTCGCCTTGGTTGGGAGATTCAAGAAGATTTTGAGGAGTTTGTTGATCCACCCGCCACTATAGAAAATGTTAGGACGAGAGCATTTTCAAGTCACCCTTCTAGGCCTTTCTTCTTGGTTGGTTCTAGCAATACGCACGTATATTTATGGGAGTTTGGTAAGGACAGAGCTACTGCAACTTATGGAGTGCTTCCTGCTGCAAATGTGCCTCCCCCGTATGCACTTGCCTCAATATCAGCTGTGCATTTTGACCACTGTGGACAGAGATTTGCGACTTCTGCATTAGACGGAACTGTATGCACTTGGCAGCTCGAGGTGGGGGGTAGGAGTAACATCCGTCCTACAGAATCCTCTTTCTGCTTTAACAATTATGCATCGGATGTCACTTATGTCACTGCAAGTGGATCAATCATTGCTGCAGCTGGTTACAGCTCTGATGGTGTTAATGTAGTTATATGGGATACACTAGCTCCATCAACGACTTCACGAGCTTCCATTATGTGTCACGAAGGTGGAGCCTGCTCCATTTGTGTGTTCGATGATGGCTTTGGAGGTGGTTCTATATCTCCCCTTATTGTGACAGGTGGAAAAGGTGGTGACGTTGGACTTCACGATTTCCGCTACATAGCTACTGGTAGGTCGAAGAGACATAAGCATTCCGATAGCAGTGAACAAAACATCAACGCCTCTTTGACAACTGACATGCGCAACAAAAACGGGGACCAGAATAGAAATGGCATGCTTTGGTATATACCCAAAGCTCATTTAGGGAGTGTCACCAGTGTATCTGCCATCCCTAATACCAGCTTTTTCTTGACGGGAAGCAAAGATGGAGATGTAAAACTTTGGGATGCAAACAAGGCCAAGCTAGTATATCATTGGCCAAAATTGCATGATCGCCACACCTTTATGCAACCTGGCTACCGTGGCTTTGGCGGAGTTGTTCGGGATGCCATTACAGACATTCAAGTTGTTTCTAATGGCTTTCTTACATGTGGGGGAGATGGCTCTGTAAAGCTAGTTCAACTTAAAGATTTTCCACACGGATTATGA

Network for GWHGAAZE024808

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	978	1010	5.40E-05

Protein Sequence

>GWHPAAZE024826
MTDLFARFKLEALECYSSSQSIFAGLDQGSASDTANTEPLNEMLKPYLGTSSSNWISDDVASNLESHAKVGLAMQYINKLLREHPSWPHTNMASPPPRVYSETELQQYKILLGNFQHMLSSRLAYFDQKFSLIPLRLINMILISLCNNGLVFIGYHVLLCCTSKDPSQEKGNAADGPLLYPNIPRLLLKATEAMSYLFSRYMASSIITCSHFESRPTKRDITCENRFGWLVAWVFYMQGLVQSLWSLRAAFKLFSDFCAEDFIKIPFTVLDLSEYYIYFASAWLQQNFKGLIMVAKPLLVKHTNGETPCEISMEDLSKFLCQMAELLTDNLSLDAVGDASQITKPMQHEHVRDIMHSIPEDERWKIIGASLWGHMSDFLMHHLNSLPEKLDENYPFCPPCRLPSFVSDSTRSELDSNNTETKIELVSVVLARLLKITLSHVSSYFEKQLALFLLQKIRDRSSSPAILWLEEFSPTQPEAHNEHFHGLENPNTSCNGTELSATEVLWDMCADPKIIRGCFGQGDSKWTQYINLKDNKGWSDVYISVVGECETEETFNCEGGLGSRSTTCSVVGSPVGDPSLDNQSFLSSGKDTTSKKKVMPFHNPKEIFKRNGELLEALCINSIDQQQAVLASNRKGIIFFDWEDGLPSINTSDYIWTNADWPHDGWAGSESTPVPTCVSPGVGLGSKKGTHLGLGGATLGVDSLARPVRDFTGGTVGISSYANVGASRLGWEIQEDFEEFVDPPATIENVRTRAFSSHPSRPFFLVGSSNTHVYLWEFGKDRATATYGVLPAANVPPPYALASISAVHFDHCGQRFATSALDGTVCTWQLEVGGRSNIRPTESSFCFNNYASDVTYVTASGSIIAAAGYSSDGVNVVIWDTLAPSTTSRASIMCHEGGACSICVFDDGFGGGSISPLIVTGGKGGDVGLHDFRYIATGRSKRHKHSDSSEQNINASLTTDMRNKNGDQNRNGMLWYIPKAHLGSVTSVSAIPNTSFFLTGSKDGDVKLWDANKAKLVYHWPKLHDRHTFMQPGYRGFGGVVRDAITDIQVVSNGFLTCGGDGSVKLVQLKDFPHGL

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.985
	SRR3591706	second leaf	11.274
	SRR3591707	mature leaf	12.544
	SRR3591708	Shoot apex	12.896
	SRR3591709	Stem	22.355
	SRR3591710	White floral bud	11.401
	SRR3591711	White flower	14.005
	SRR3591712	Green floral bud	14.639
	SRR3591713	Yellow flower	9.958
SRP173429	SRR8316895	Juvenile bud stage	8.143
	SRR8316896	Juvenile bud stage	10.005
	SRR8316897	Juvenile bud stage	4.387
	SRR8316894	Third green stage	5.257
	SRR8316900	Third green stage	12.371
	SRR8316901	Third green stage	11.918
	SRR8316898	Complete white stage	2.666
	SRR8316899	Complete white stage	10.170
	SRR8316903	Complete white stage	8.277
	SRR8316902	Silver flowering stage	4.013
	SRR8316904	Silver flowering stage	6.657
	SRR8316905	Silver flowering stage	2.751
	SRR8316906	Gold flowering stage	10.433
	SRR8316907	Gold flowering stage	8.980
	SRR8316908	Gold flowering stage	9.079
SRP132670	SRR6706286	Control	11.057
	SRR6706287	Light intensity 50%	10.661
	SRR6706288	Light intensity 20%	11.675
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.029
	CNS0095593	Slightly white alabastrum(diploid) 2	6.247
	CNS0095594	Slightly white alabastrum(diploid) 3	5.426
	CNS0095595	Whole white alabastrum(diploid) 2	7.496
	CNS0095596	Whole white alabastrum(diploid) 3	7.314
	CNS0095597	Whole white alabastrum(diploid) 4	6.705
	CNS0095598	Silvery flower (diploied) 1	7.080
	CNS0095599	Silvery flower (diploied) 2	7.054
	CNS0095600	Silvery flower (diploied) 3	13.603
	CNS0095601	Golden flower (diploid) 1	7.601
	CNS0095602	Golden flower (diploid) 2	13.455
	CNS0095603	Golden flower (diploid) 3	13.217
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.199
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.215
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.586
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.397
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.319
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.983
	CNS0095610	Silvery flower (tetraploid) 1	8.843
	CNS0095611	Silvery flower (tetraploid) 2	8.715
	CNS0095612	Silvery flower (tetraploid) 3	10.596
	CNS0095613	Golden flower (tetraploid) 1	4.502
	CNS0095614	Golden flower (tetraploid) 2	8.979
	CNS0095615	Golden flower (tetraploid) 3	8.350
CRA001975	CRR073297	Stem 1	15.141
	CRR073298	Stem 2	12.138
	CRR073299	Stem 3	9.610
	CRR073300	Leaf 1	14.349
	CRR073301	Leaf 2	12.785
	CRR073302	Leaf 3	7.812
	CRR073303	Juvenile bud 1	10.147
	CRR073304	Juvenile bud 2	6.249
	CRR073305	Juvenile bud 3	16.357
	CRR073306	Third green 1	6.400
	CRR073307	Third green 2	2.832
	CRR073308	Third green 3	6.546
	CRR073309	Second white 1	5.538
	CRR073310	Second white 2	6.876
	CRR073311	Second white 3	9.046
	CRR073312	Silver flowering 1	6.872
	CRR073313	Silver flowering 2	8.396
	CRR073314	Silver flowering 3	7.239
	CRR073315	Gold flowering 1	4.298
	CRR073316	Gold flowering 2	7.459
	CRR073317	Gold flowering 3	3.757
	CRR073318	Tawny withering 1	11.653
	CRR073319	Tawny withering 2	11.053
	CRR073320	Tawny withering 3	12.382