Detail information of GWHGAAZE024795


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007051505.11.3216E-108Pyridoxamine 5'-phosphate oxidase family protein isoform 1 [Theobroma cacao]
COGYP_007054349.19E-45PPOX class FMN-dependent protein
Swissprottr|Q9ZPY1|PPOX2_ARATH1E-96Pyridoxine/pyridoxamine 5'-phosphate oxidase 2
trEMBLtr|A0A061DTI4|A0A061DTI4_THECC5E-109Pyridoxamine 5'-phosphate oxidase family protein isoform 1 {ECO:0000313|EMBL:EOX95662.1}
TAIR10AT2G46580.15E-71Pyridoxamine 5'-phosphate oxidase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4959909049601932-
GWHAAZE00000007mRNA4959909049601932-
GWHAAZE00000007exon4959909049599191-
GWHAAZE00000007exon4959929049599457-
GWHAAZE00000007exon4960106949601164-
GWHAAZE00000007exon4960129949601331-
GWHAAZE00000007exon4960154349601600-
GWHAAZE00000007exon4960170549601754-
GWHAAZE00000007exon4960184949601932-
GWHAAZE00000007CDS4960184949601932-
GWHAAZE00000007CDS4960170549601754-
GWHAAZE00000007CDS4960154349601600-
GWHAAZE00000007CDS4960129949601331-
GWHAAZE00000007CDS4960106949601164-
GWHAAZE00000007CDS4959929049599457-
GWHAAZE00000007CDS4959909049599191-
Transcript Sequence

Network for GWHGAAZE024795

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12766.8Pyridox_oxase_24962.50E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00275pdxH, PNPO Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Vitamin B6 metabolismmap00750

Gene Ontology

GO term OntologyName
GO:0048037molecular_functioncofactor binding
GO:0010181molecular_functionFMN binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.150
SRR3591706second leaf25.468
SRR3591707mature leaf12.660
SRR3591708Shoot apex27.960
SRR3591709Stem23.090
SRR3591710White floral bud5.762
SRR3591711White flower8.260
SRR3591712Green floral bud28.831
SRR3591713Yellow flower5.893
SRP173429 SRR8316895Juvenile bud stage 20.171
SRR8316896Juvenile bud stage 21.371
SRR8316897Juvenile bud stage 13.270
SRR8316894Third green stage 9.329
SRR8316900Third green stage 30.704
SRR8316901Third green stage 23.371
SRR8316898Complete white stage 2.530
SRR8316899Complete white stage 21.489
SRR8316903Complete white stage 2.879
SRR8316902Silver flowering stage1.406
SRR8316904Silver flowering stage1.033
SRR8316905Silver flowering stage0.253
SRR8316906Gold flowering stage 1.488
SRR8316907Gold flowering stage 1.277
SRR8316908Gold flowering stage 3.830
SRP132670SRR6706286Control12.837
SRR6706287Light intensity 50%14.098
SRR6706288Light intensity 20%19.777
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.996
CNS0095593Slightly white alabastrum(diploid) 232.423
CNS0095594Slightly white alabastrum(diploid) 326.027
CNS0095595Whole white alabastrum(diploid) 227.514
CNS0095596Whole white alabastrum(diploid) 331.067
CNS0095597Whole white alabastrum(diploid) 425.205
CNS0095598Silvery flower (diploied) 115.441
CNS0095599Silvery flower (diploied) 216.146
CNS0095600Silvery flower (diploied) 36.584
CNS0095601Golden flower (diploid) 111.129
CNS0095602Golden flower (diploid) 26.571
CNS0095603Golden flower (diploid) 35.400
CNS0095604Slightly white alabastrum(tetraploid) 138.412
CNS0095605Slightly white alabastrum(tetraploid) 238.782
CNS0095606Slightly white alabastrum(tetraploid) 345.121
CNS0095607Whole white alabastrum(tetraploid) 121.106
CNS0095608Whole white alabastrum(tetraploid) 223.944
CNS0095609Whole white alabastrum(tetraploid) 333.083
CNS0095610Silvery flower (tetraploid) 112.223
CNS0095611Silvery flower (tetraploid) 219.940
CNS0095612Silvery flower (tetraploid) 37.921
CNS0095613Golden flower (tetraploid) 13.938
CNS0095614Golden flower (tetraploid) 210.570
CNS0095615Golden flower (tetraploid) 31.245
CRA001975CRR073297Stem 125.938
CRR073298Stem 221.107
CRR073299Stem 320.808
CRR073300Leaf 120.341
CRR073301Leaf 221.604
CRR073302Leaf 329.702
CRR073303Juvenile bud 132.512
CRR073304Juvenile bud 213.632
CRR073305Juvenile bud 317.904
CRR073306Third green 10.137
CRR073307Third green 20.068
CRR073308Third green 30.132
CRR073309Second white 10.821
CRR073310Second white 20.481
CRR073311Second white 30.395
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.133
CRR073314Silver flowering 30.411
CRR073315Gold flowering 114.785
CRR073316Gold flowering 216.602
CRR073317Gold flowering 313.536
CRR073318Tawny withering 118.512
CRR073319Tawny withering 216.862
CRR073320Tawny withering 315.729