Gene detail

Detail information of GWHGAAZE024789

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010267413.1	0	PREDICTED: uncharacterized protein LOC104604665 [Nelumbo nucifera]
COG	YP_435799.1	2E-38	FAD/FMN-containing dehydrogenase
trEMBL	tr\|A0A061DT84\|A0A061DT84_THECC	0	D-arabinono-1,4-lactone oxidase family protein {ECO:0000313\|EMBL:EOX95602.1}
TAIR10	AT2G46760.1	0	D-arabinono-1,4-lactone oxidase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	49447671	49453770	+
GWHAAZE00000007	mRNA	49447671	49453770	+
GWHAAZE00000007	exon	49447671	49448225	+
GWHAAZE00000007	exon	49452112	49452367	+
GWHAAZE00000007	exon	49452855	49452956	+
GWHAAZE00000007	exon	49453040	49453770	+
GWHAAZE00000007	CDS	49447671	49448225	+
GWHAAZE00000007	CDS	49452112	49452367	+
GWHAAZE00000007	CDS	49452855	49452956	+
GWHAAZE00000007	CDS	49453040	49453770	+

Transcript Sequence
>GWHTAAZE024823 ATGATGATGAGTATGTGCATGGTGGATTGTACTCCTCCAGAAGATCCCATAAAATGTTCATCAAAAAACTCAAACTGTACCATCACAAACTCGTACGGCTCCTTCCCGGATCGAACCATATGCCGTGCAGTCGAGGTTAAGTACCCCAAAACGGAGCAGGAACTCATCGAAGCAGTAGCAACCGCAACAAAGAAGAAAATAAAAGTCAAAGTAACAACTCGATATTCTCACAGCATTCCAAAGCTTGTTTGCCCTGAGGGAGAGGATGGTCTCCTCATAAGCACAAAGTATCTCAACCGCACTTTAAGGATCGACGCTGAGAACATGACGATGACAGTAGAGAGCGGGTTGGTGCTAAGGGAGCTGATTAAAGAGGCAGCAGAGGCAGGGTTGGCTTTGCCATATACGCCGTACTGGTGGGGTTTGAGCATAGGGGGACTTATGGGGACGGGTGCTCACGGTAGCACGCTATGGGGGAAGGGGAGTTCGGTTCATGACTATGTCGTTGAGGTTCGGATAGTGACTCCGGCTGGACCCGAGGATGGGTATGCTAAGGTGACTCTGAAATTGCAACCAATGTTCAAAAGATCCATCACATACATAACTAAAAATGACTCGGACCTTGAAAATCAAGTGGCTAACTTTGGCAATGATCATGAGTTTGCAGACCTAACTTGGTACCCAAGTCAACGTAAGGTAGTCTACCGGCTTGACGATAGAGTTCCTTCCAACTTCTCCGGCGATGGCTGGATTGACTTCCCAGGGTTTCGGTCCATACCTTCACTTGTCCTAGCAGTTTTAAGGACTACAGAGGAAAATCAAGAAAGGCTTGGTGATGCTGATGGAAAATGTATTAGTGCGAAACTTACTGCATCCACATTGAAGACTAGTGCTTACGGTTTGACAAACGATGGAATAAGTTTTACTAGCTACCCTGTAGTTGGGTACCACAACCGTCTCCAAGCTTCGGGAACTTGCCTTGATAGCCATAAGGATGCACAAATCACCACTTGTCCATGGGACCATCGAGTAAAAGGCTTGTTCTTTCACCAAACTACCATTAGCATTGAATTGTCCAAAGCAAAGAGCTTTATTCAAGACGTGCAAAAGCTAGTGGATTTAGCGCCAAAGTCCATGTGTGGCGTAGAACTATATAATGGCATCCTCATGAGATATGTTACAGCCTCAAGTGCTTATTTAGGCAAACAAGAAGCTGCACTAGACTTTGACATTACGTACTTCCGAAGTAGTGACCCAAAAAGCCCCAGAATGTACGAGGATGTATTAGAAGAGATAGAGCAGTTGGCAGTGTTCAGGTATGGGGGGTTGCCTCATTGGGGAAAGAATCGGAACGTGGCATTTGATGGAGCAATCAACAAGTACAAATATCTCAAGAAGTTCCTCAAGGTTAAGAAGATGTATGACCCATTAGGGCTCTTCTCTAGCGAGTGGACTGACCAAGTTTTAGGATTAAGCAGTAAAGTGACCATAATGAAATCGGGATGTGCTCTGGAAGGATTGTGTATATGCTCGCAAGACATTCATTGTGCCCCAGACAAAGGTTACTTGTGTCAACCGGGCAAGATTTACAAGGATGCCAGGGTTTGTACTCATTCCAATAATCAAATTCCGGTTACTAACTAG

Network for GWHGAAZE024789

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.24	FAD_binding_4	47	178	1.70E-19
PF04030.15	ALO	349	487	2.80E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00103	GULO	Metabolic pathways	map01100
K00103	GULO	Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016020	cellular_component	membrane
GO:0016491	molecular_function	oxidoreductase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0071949	molecular_function	FAD binding
GO:0003885	molecular_function	D-arabinono-1,4-lactone oxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.021
	SRR3591706	second leaf	1.250
	SRR3591707	mature leaf	0.061
	SRR3591708	Shoot apex	0.685
	SRR3591709	Stem	3.920
	SRR3591710	White floral bud	0.195
	SRR3591711	White flower	0.111
	SRR3591712	Green floral bud	0.194
	SRR3591713	Yellow flower	0.105
SRP173429	SRR8316895	Juvenile bud stage	0.801
	SRR8316896	Juvenile bud stage	1.082
	SRR8316897	Juvenile bud stage	0.113
	SRR8316894	Third green stage	0.434
	SRR8316900	Third green stage	1.568
	SRR8316901	Third green stage	2.459
	SRR8316898	Complete white stage	0.183
	SRR8316899	Complete white stage	0.813
	SRR8316903	Complete white stage	0.432
	SRR8316902	Silver flowering stage	0.077
	SRR8316904	Silver flowering stage	0.011
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.080
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.047
SRP132670	SRR6706286	Control	1.395
	SRR6706287	Light intensity 50%	1.250
	SRR6706288	Light intensity 20%	1.449
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.197
	CNS0095593	Slightly white alabastrum(diploid) 2	0.192
	CNS0095594	Slightly white alabastrum(diploid) 3	0.283
	CNS0095595	Whole white alabastrum(diploid) 2	0.187
	CNS0095596	Whole white alabastrum(diploid) 3	0.361
	CNS0095597	Whole white alabastrum(diploid) 4	0.367
	CNS0095598	Silvery flower (diploied) 1	0.072
	CNS0095599	Silvery flower (diploied) 2	0.257
	CNS0095600	Silvery flower (diploied) 3	0.428
	CNS0095601	Golden flower (diploid) 1	0.380
	CNS0095602	Golden flower (diploid) 2	0.681
	CNS0095603	Golden flower (diploid) 3	0.519
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.038
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.249
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.089
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.487
	CNS0095610	Silvery flower (tetraploid) 1	0.010
	CNS0095611	Silvery flower (tetraploid) 2	0.024
	CNS0095612	Silvery flower (tetraploid) 3	0.128
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.083
CRA001975	CRR073297	Stem 1	0.395
	CRR073298	Stem 2	0.439
	CRR073299	Stem 3	1.449
	CRR073300	Leaf 1	1.053
	CRR073301	Leaf 2	0.641
	CRR073302	Leaf 3	1.287
	CRR073303	Juvenile bud 1	0.319
	CRR073304	Juvenile bud 2	0.180
	CRR073305	Juvenile bud 3	0.724
	CRR073306	Third green 1	0.170
	CRR073307	Third green 2	0.099
	CRR073308	Third green 3	0.592
	CRR073309	Second white 1	0.046
	CRR073310	Second white 2	0.168
	CRR073311	Second white 3	0.113
	CRR073312	Silver flowering 1	0.259
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.154
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	5.048
	CRR073319	Tawny withering 2	3.865
	CRR073320	Tawny withering 3	6.926