Gene detail

Detail information of GWHGAAZE024691

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011032482.1	0	PREDICTED: cysteine synthase-like [Populus euphratica]
COG	YP_591171.1	2E-134	cysteine synthase
Swissprot	tr\|Q43317\|CYSK_CITLA	0	Cysteine synthase
trEMBL	tr\|A5AFH5\|A5AFH5_VITVI	0	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}
TAIR10	AT4G14880.4	3E-142	O-acetylserine (thiol) lyase (OAS-TL) isoform A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47705087	47712747	+
GWHAAZE00000007	mRNA	47705087	47712747	+
GWHAAZE00000007	exon	47705087	47705128	+
GWHAAZE00000007	exon	47705225	47705334	+
GWHAAZE00000007	exon	47705459	47705516	+
GWHAAZE00000007	exon	47706323	47706586	+
GWHAAZE00000007	exon	47706953	47707090	+
GWHAAZE00000007	exon	47707380	47707431	+
GWHAAZE00000007	exon	47710146	47710225	+
GWHAAZE00000007	exon	47711337	47711396	+
GWHAAZE00000007	exon	47711502	47711582	+
GWHAAZE00000007	exon	47712399	47712747	+
GWHAAZE00000007	CDS	47705087	47705128	+
GWHAAZE00000007	CDS	47705225	47705334	+
GWHAAZE00000007	CDS	47705459	47705516	+
GWHAAZE00000007	CDS	47706323	47706586	+
GWHAAZE00000007	CDS	47706953	47707090	+
GWHAAZE00000007	CDS	47707380	47707431	+
GWHAAZE00000007	CDS	47710146	47710225	+
GWHAAZE00000007	CDS	47711337	47711396	+
GWHAAZE00000007	CDS	47711502	47711582	+
GWHAAZE00000007	CDS	47712399	47712491	+
GWHAAZE00000007	three_prime_UTR	47712492	47712747	+

Transcript Sequence
>GWHTAAZE024725 ATGGCAGAGGAGAAATATGCGATTGCTAAGGATGTTACCGAGTTAATAGGTAAAACACCACTGGTGTATTTGAACAATGTTGTGGATGGTTGTGTTGCTCGGATTGCTGCCAAGCTTGAGATGATGGAACCCTGCTCTAGTGTCAAAGACAGGATTGGGTATAGTATGATAAAAGATGCAGAGGAGAAAGGCCTCATTACGCCGGGCGAGAGTGTTCTGGTTGAGCCTACCAGTGGAAATACTGGCATTGGCTTGGCATTTATGGCAGCAGCTAAGAATTACAAGTTAATCATCACAATGCCTGCTTCTATGAGCCTCGAGAGGAGAATCATTCTCCGAGCTTTTGGAGCTGAATTGGTTCTCACAGATCCTGCTAGGGGCATGAAAGGAGCTGTTCAAAAGGCAGAAGAGATACTGGCAAAGACACCCAATGCATATATTCTTCAGCAATTTGAAAACCCCGCCAACCCCAAGATTCATTATGAAACAACTGGTCCAGAGATCTGGAAAGGCTCAGGTGGAAAAGTGGATGCTTTTGTTTCTGGGATTGGAACTGGAGGTACAGTAACTGGTGCAGGGAAGTTCCTTAAAGAGCAAAACCCTGATGTCAAGTTGTATGGTGTAGAGCCAGTTGAAAGTGCTGTGTTGTCAGGAGGAAAACCTGGTCCTCATAAGATCCAAGGAATTGGTGCCGGTTTCATACCTGGAGTACTGGATACTGGAATAGTTGATGAAGTTGTTCAAATATCAAGTGAGGAAGCTATTGAAACTGCTAAACTTCTTGCACTAAAAGAAGGTTTGCTGGTAGGGATATCATCTGGTGCTGCTGCTGCAGCGGCGATTAAGATAGCCAAGAGGCCAGAAAATGCTGGAAAACTCATTGTTGTTATCTTCCCGAGCTTTGGAGAGCGGTACCTTTCTTCAGTTCTGTTCGACTCGTTGAAGCACGAGGCAGAAAATATGCTTTTCGAGCAGTGAGTGAGGCCTTCACTGAGTGAGCTAAGTTCTCCGAGTCTGAAAGTTTGAAGCTTAAATATATTGTTTCCCAGTGCAGGTGTGGTTTGGATGATTTTTACATGGTGTTAGTCTTCAATAAATCCCGTGAATATTTTATAGAAAGTGCTTTTTGTGATGTTTGCTTTAGAAAAGGTTTACTGTAGTGGACAGACATGTAAAGAGATACAATAATAATATAGACAAATAAAATATTTCCCAATTGTGGTGTTACACTTAA

Network for GWHGAAZE024691

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	13	299	8.70E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01738	cysK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine
GO:0004124	molecular_function	cysteine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.733
	SRR3591706	second leaf	0.181
	SRR3591707	mature leaf	0.774
	SRR3591708	Shoot apex	1.253
	SRR3591709	Stem	18.557
	SRR3591710	White floral bud	16.757
	SRR3591711	White flower	35.122
	SRR3591712	Green floral bud	2.384
	SRR3591713	Yellow flower	44.077
SRP173429	SRR8316895	Juvenile bud stage	2.313
	SRR8316896	Juvenile bud stage	2.792
	SRR8316897	Juvenile bud stage	0.045
	SRR8316894	Third green stage	0.975
	SRR8316900	Third green stage	3.180
	SRR8316901	Third green stage	2.953
	SRR8316898	Complete white stage	7.525
	SRR8316899	Complete white stage	9.019
	SRR8316903	Complete white stage	8.117
	SRR8316902	Silver flowering stage	7.619
	SRR8316904	Silver flowering stage	8.158
	SRR8316905	Silver flowering stage	5.093
	SRR8316906	Gold flowering stage	17.227
	SRR8316907	Gold flowering stage	10.474
	SRR8316908	Gold flowering stage	12.803
SRP132670	SRR6706286	Control	4.485
	SRR6706287	Light intensity 50%	4.406
	SRR6706288	Light intensity 20%	4.991
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.896
	CNS0095593	Slightly white alabastrum(diploid) 2	7.915
	CNS0095594	Slightly white alabastrum(diploid) 3	4.738
	CNS0095595	Whole white alabastrum(diploid) 2	8.360
	CNS0095596	Whole white alabastrum(diploid) 3	1.731
	CNS0095597	Whole white alabastrum(diploid) 4	6.646
	CNS0095598	Silvery flower (diploied) 1	17.500
	CNS0095599	Silvery flower (diploied) 2	18.746
	CNS0095600	Silvery flower (diploied) 3	26.388
	CNS0095601	Golden flower (diploid) 1	19.583
	CNS0095602	Golden flower (diploid) 2	34.233
	CNS0095603	Golden flower (diploid) 3	34.969
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.689
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.637
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.731
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.703
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.129
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.718
	CNS0095610	Silvery flower (tetraploid) 1	12.961
	CNS0095611	Silvery flower (tetraploid) 2	11.237
	CNS0095612	Silvery flower (tetraploid) 3	8.995
	CNS0095613	Golden flower (tetraploid) 1	15.764
	CNS0095614	Golden flower (tetraploid) 2	15.672
	CNS0095615	Golden flower (tetraploid) 3	6.898
CRA001975	CRR073297	Stem 1	5.335
	CRR073298	Stem 2	3.575
	CRR073299	Stem 3	3.360
	CRR073300	Leaf 1	6.179
	CRR073301	Leaf 2	6.759
	CRR073302	Leaf 3	4.122
	CRR073303	Juvenile bud 1	6.371
	CRR073304	Juvenile bud 2	9.292
	CRR073305	Juvenile bud 3	9.984
	CRR073306	Third green 1	9.681
	CRR073307	Third green 2	16.219
	CRR073308	Third green 3	12.424
	CRR073309	Second white 1	16.801
	CRR073310	Second white 2	11.578
	CRR073311	Second white 3	11.864
	CRR073312	Silver flowering 1	23.229
	CRR073313	Silver flowering 2	17.148
	CRR073314	Silver flowering 3	23.143
	CRR073315	Gold flowering 1	2.354
	CRR073316	Gold flowering 2	1.439
	CRR073317	Gold flowering 3	1.049
	CRR073318	Tawny withering 1	14.784
	CRR073319	Tawny withering 2	20.687
	CRR073320	Tawny withering 3	10.951