Gene detail

Detail information of GWHGAAZE024629

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011069826.1	0	PREDICTED: UDP-glucuronate 4-epimerase 1 [Sesamum indicum]
COG	YP_003710181.1	2E-109	NAD-dependent epimerase/dehydratase
Swissprot	tr\|Q9M0B6\|GAE1_ARATH	0	UDP-glucuronate 4-epimerase 1
trEMBL	tr\|B9SQF3\|B9SQF3_RICCO	0	UDP-glucuronate 5-epimerase, putative {ECO:0000313\|EMBL:EEF34179.1}
TAIR10	AT4G30440.1	0	UDP-D-glucuronate 4-epimerase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	46559561	46560745	-
GWHAAZE00000007	mRNA	46559561	46560745	-
GWHAAZE00000007	exon	46559561	46560745	-
GWHAAZE00000007	CDS	46559561	46560745	-

Transcript Sequence
>GWHTAAZE024663 ATGTTCCTGTGGGCCCTCTTCTTCATAGCCCTAACGGCGTCGTATTTAAGTTTCCAGTCTTTTATTTCTTCCGGTAGCCGGTACTTCTCCTCCACATGGGGCGGAATACAATGGGAGAAAAACATCCGTAAATCCGCTCAGATCCACCGCGCAAACGGAATCTCCGTCCTCGTTACCGGCGCCGCCGGTTTCGTCGGCAGCCACGTCAGCCTCGCATTAAAGAAACGAAACGACGGCGTCGTGGGCCTCGATAACTTTAACTCTTACTACGACCCTTCTTTAAAAAAAGCAAGAAAAGCCCTTCTAAACTCCCACAAAATCTTCGTCATTGAGGGTGATATCAACGACATGCGCATGTTAGCAAGGGTCTTCGAAATAGCTCATTTTACACACGTGATGCACTTGGCTGCGCAGGCCGGCGTACGATACGCACTCGAAAACCCACAATCGTACGTAAACAGCAACATCGCCGGTTTAGTCAATCTCCTCGAAATCTGTGCAAAAACCGAACTGCAACCGGCTTTTATTTGGGCGTCATCTAGTTCGGTATACGGATTAAACGACAAAACTCCTTTTTCAGAAAAAGACCGGACCGACCGGCCCGCTTCTTTATACGCCGCAACAAAAAAAGCCGGTGAGGAAATAACCCACACATATAACCATATTTACGGTTTATCAATAACCGGTTTGAGATTCTTTACAGTTTATGGTCCGTGGGGCAGACCGGATATGGCTTATTTTTCTTTTACCAGCAATATTCTTCAGGGTAAACCGATAACGGTTTATCGGGGCAAGAACCAGCTCGACTTGGCCCGGGATTTCACTTACATTGATGATATTGTCAAAGGGTGTATTGGGTCGTTGGATTCGGCTGGTAAGAGTACCGGGTCGGGTGGAAAGAAGACCCGACCCGCTATGTACCGGATATTCAACTTGGGTAATACGTCACCGGTTAGTGTACCGGATTTGGTGGGGATATTGGAAAAGCATTTGAAGGTTAAAGCCAAGAAGAACTTTGTGGATATGCCTGGAAACGGCGACGTTTCGTTTACGCATGCGAATATAAGTTTGGCCCGGAGGGAAATCGGGTATAAACCGACAACCGATTTGGAAAACGGGTTGAGGAAGTTTGTTAAGTGGTATCTCGAATATTACGGCTATAATCACGGCAAGACAAGTGTATAG

Network for GWHGAAZE024629

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	57	376	9.20E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08679	E5.1.3.6	Metabolic pathways	map01100
K08679	E5.1.3.6	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.583
	SRR3591706	second leaf	6.853
	SRR3591707	mature leaf	0.169
	SRR3591708	Shoot apex	19.385
	SRR3591709	Stem	22.740
	SRR3591710	White floral bud	55.454
	SRR3591711	White flower	26.694
	SRR3591712	Green floral bud	34.145
	SRR3591713	Yellow flower	14.880
SRP173429	SRR8316895	Juvenile bud stage	44.517
	SRR8316896	Juvenile bud stage	40.549
	SRR8316897	Juvenile bud stage	34.637
	SRR8316894	Third green stage	13.440
	SRR8316900	Third green stage	25.493
	SRR8316901	Third green stage	41.503
	SRR8316898	Complete white stage	2.077
	SRR8316899	Complete white stage	58.272
	SRR8316903	Complete white stage	1.881
	SRR8316902	Silver flowering stage	5.645
	SRR8316904	Silver flowering stage	1.815
	SRR8316905	Silver flowering stage	0.680
	SRR8316906	Gold flowering stage	2.387
	SRR8316907	Gold flowering stage	3.297
	SRR8316908	Gold flowering stage	6.337
SRP132670	SRR6706286	Control	13.014
	SRR6706287	Light intensity 50%	17.267
	SRR6706288	Light intensity 20%	13.535
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.023
	CNS0095593	Slightly white alabastrum(diploid) 2	47.204
	CNS0095594	Slightly white alabastrum(diploid) 3	45.042
	CNS0095595	Whole white alabastrum(diploid) 2	33.918
	CNS0095596	Whole white alabastrum(diploid) 3	19.010
	CNS0095597	Whole white alabastrum(diploid) 4	46.332
	CNS0095598	Silvery flower (diploied) 1	51.016
	CNS0095599	Silvery flower (diploied) 2	66.777
	CNS0095600	Silvery flower (diploied) 3	32.191
	CNS0095601	Golden flower (diploid) 1	54.768
	CNS0095602	Golden flower (diploid) 2	41.248
	CNS0095603	Golden flower (diploid) 3	40.304
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.425
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.812
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.343
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.259
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.078
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.410
	CNS0095610	Silvery flower (tetraploid) 1	2.110
	CNS0095611	Silvery flower (tetraploid) 2	5.396
	CNS0095612	Silvery flower (tetraploid) 3	14.147
	CNS0095613	Golden flower (tetraploid) 1	1.838
	CNS0095614	Golden flower (tetraploid) 2	1.201
	CNS0095615	Golden flower (tetraploid) 3	6.200
CRA001975	CRR073297	Stem 1	32.509
	CRR073298	Stem 2	30.442
	CRR073299	Stem 3	31.152
	CRR073300	Leaf 1	47.902
	CRR073301	Leaf 2	58.409
	CRR073302	Leaf 3	31.029
	CRR073303	Juvenile bud 1	65.590
	CRR073304	Juvenile bud 2	66.779
	CRR073305	Juvenile bud 3	87.476
	CRR073306	Third green 1	27.051
	CRR073307	Third green 2	49.885
	CRR073308	Third green 3	38.645
	CRR073309	Second white 1	6.427
	CRR073310	Second white 2	6.747
	CRR073311	Second white 3	8.282
	CRR073312	Silver flowering 1	46.516
	CRR073313	Silver flowering 2	44.843
	CRR073314	Silver flowering 3	37.761
	CRR073315	Gold flowering 1	61.940
	CRR073316	Gold flowering 2	61.652
	CRR073317	Gold flowering 3	55.324
	CRR073318	Tawny withering 1	50.311
	CRR073319	Tawny withering 2	67.830
	CRR073320	Tawny withering 3	61.916