Gene detail

Detail information of GWHGAAZE024594

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271577.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Vitis vinifera]
COG	YP_001192956.1	8E-28	two component regulator
Swissprot	tr\|C0LGK9\|Y2242_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At2g24230 (Precursor)
trEMBL	tr\|F6I799\|F6I799_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62817.1}
TAIR10	AT2G24230.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45812962	45815019	+
GWHAAZE00000007	mRNA	45812962	45815019	+
GWHAAZE00000007	exon	45812962	45813630	+
GWHAAZE00000007	exon	45813700	45815019	+
GWHAAZE00000007	CDS	45812962	45813630	+
GWHAAZE00000007	CDS	45813700	45815019	+

Transcript Sequence
>GWHTAAZE024628 ATGGGTTTTGGTTTTCTTGGTTCCATTTTGGTTCTAGCACTGTTCTTTAGGTCTGTACATTGTCAACAACCCAATACAGATGGGTTCTTTGTCTCTGATTTCTTGCAAAAAATGGGCTTAGCCTCATCTCAAGTTCATAATTTCACTTCCCCAGTTTGTTCATGGCAAGGTGTTTTTTGTGATGCTAAACAAGAAAGTGTGATTGGTTTGGTAGCTAGTGGTGTGGGCCTTATTGGTTCAATCCCAGATTCCACCGTTGGTAAGCTCACAAACCTTCAATTCTTGGATCTAAGCAATAACAAAATCACTAGGTTGCCTTCTGATTTTTGGAGCTTTGGTTCACTCAAGAACCTTAATCTCTCATTCAACCAAATCTCTGAAAATCTCCCTAGCAACGTTGGCAATTTCGGCCTACTCGAGACCCTGGACCTCTCTTTCAACAATTTCACCGAAAACATACCCGAATCCATTAGTTCACTATCCAATTTGCAAGTTCTTAAGCTCAATCACAACGGGTTTTTGTCAAATGTTCCGACGGGGATCTTGAATTGCCATTCTTTGGTTTCGATCGATCTTTCTTCAAATCAGCTCACCGGGTCTCTCCCCGATGGCTTTGGTTCTTCATTTTCTAAACTCAAGTCATTCAACATTGCTGAAAACATGATCAATGGTTCTGTTGTTAATGCCTTTCAAGGCCAATTGGAAGTGCTTGATTTGAGCCGAAATCAGTTCGAAGGCCACATTTCTAAGGTAAATTTCAGCTCCAACTTCAATTGGTCTCAATTGTTTTACCTTGACTTATCTGAAAATAGGCTTAGTGGTGAGTTTCTTGATAATTTGAAGCAAGCCAACAATCTCAAACGCCTTAATCTTGCTCATAATCGGTTTTCGAGACAACCCTTTTTGCAAATTGATTCAAATCCTAGTTTAGAGTATTTGAATTTGTCTGAAACTAATTTGATTGGGCACATTCCAATTGAGATCTCAATGTTGAGTAATTTGAGGGTTCTTGATCTTTCCAAGAACCATCTCAAAAGCCATATCCCTCTTTTGAGTGTTAAAAGCCTTCAAGAACTTGATGTTTCTTTCAACAATCTAAGTGGTGAAATTCCTCTTTCACTATTGGAGAAACTCCCATGGATGGAGAGATTTAACTTCTCCTACAATAACTTAACCCTTTGTGCCTCTGAGTTTTCTCCACAAACCCTAGAATCAGCTTTCATTGGGTCATCAAACACCTGCCCACTTGCTGCCAACCCTAATTTGTTCAGAAAGGGACCCCAAACCCATAAGGGTCTCAAGCTTGCTTTGGCTTTAACAATCTCAATGGTCTTTTTGCTTGTGGGTTTGCTGTTTTTAGCCTTTGGGTGCCGAAGAAAAACCCGAATGTGGGCTGTTAAACAAACTTCTTACAAGGAAGAACAAAATATCTCGGGCCCCTTCTCGTTCCAAACCGATTCAACCACTTGGGTGGCTGATGTTAAGCTTGCAACTTCGGTTAACGTGGTCATTTTCGAGAAGCCATTGTTGAACTTCACATTCGCAGACCTCTTGTCTGCTACTTCAAACTTCGATAGGGGTACCCTTTTAGCCGAAGGCCGATTCGGGCCAGTTTATAGAGGGTTCTTGCCTGGTGGGATCCATGTTGCCGTTAAAGTCTTGGTCCATGGTTCCACCATGACCGACCAAGAAGCTGCAAGGGAGCTCGAGTACTTAGGCCGAATCAAACACCCGAATCTTGTTCCATTGACAGGATATTGCCTTGCCGGTGAACAAAGAATTGCCATTTATGAATATATGGAAAATGGTAATCTTCAAAATCTACTTCATGACCTTCCACTCGGGGTCCACACTACCGAAGATTGGAGCACCGATACATGGGAAGAAGAAGATCAAGAAAATAATGGGATCCAAAATGTTGGGTCAGAAGGGTTGTTAACAACGTGGCGGTTCAGGCACAAAATTGCCCTTGGCACCGCCCGGCATTAG

Network for GWHGAAZE024594

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	78	125	1.60E-09
PF13855.7	LRR_8	139	197	1.70E-07
PF13516.7	LRR_6	355	369	1.1
PF07714.18	PK_Tyr_Ser-Thr	528	612	6.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.053
	SRR3591706	second leaf	8.130
	SRR3591707	mature leaf	2.529
	SRR3591708	Shoot apex	13.623
	SRR3591709	Stem	15.728
	SRR3591710	White floral bud	3.338
	SRR3591711	White flower	2.919
	SRR3591712	Green floral bud	3.577
	SRR3591713	Yellow flower	0.801
SRP173429	SRR8316895	Juvenile bud stage	2.967
	SRR8316896	Juvenile bud stage	2.390
	SRR8316897	Juvenile bud stage	1.178
	SRR8316894	Third green stage	0.945
	SRR8316900	Third green stage	1.889
	SRR8316901	Third green stage	1.478
	SRR8316898	Complete white stage	0.437
	SRR8316899	Complete white stage	1.499
	SRR8316903	Complete white stage	0.889
	SRR8316902	Silver flowering stage	0.404
	SRR8316904	Silver flowering stage	0.679
	SRR8316905	Silver flowering stage	0.413
	SRR8316906	Gold flowering stage	1.240
	SRR8316907	Gold flowering stage	1.044
	SRR8316908	Gold flowering stage	2.259
SRP132670	SRR6706286	Control	1.400
	SRR6706287	Light intensity 50%	1.353
	SRR6706288	Light intensity 20%	1.209
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.418
	CNS0095593	Slightly white alabastrum(diploid) 2	0.895
	CNS0095594	Slightly white alabastrum(diploid) 3	1.004
	CNS0095595	Whole white alabastrum(diploid) 2	0.963
	CNS0095596	Whole white alabastrum(diploid) 3	0.856
	CNS0095597	Whole white alabastrum(diploid) 4	0.643
	CNS0095598	Silvery flower (diploied) 1	1.283
	CNS0095599	Silvery flower (diploied) 2	0.991
	CNS0095600	Silvery flower (diploied) 3	1.021
	CNS0095601	Golden flower (diploid) 1	1.062
	CNS0095602	Golden flower (diploid) 2	1.674
	CNS0095603	Golden flower (diploid) 3	1.336
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.454
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.401
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.540
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.389
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.641
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.681
	CNS0095610	Silvery flower (tetraploid) 1	0.712
	CNS0095611	Silvery flower (tetraploid) 2	1.003
	CNS0095612	Silvery flower (tetraploid) 3	0.820
	CNS0095613	Golden flower (tetraploid) 1	0.052
	CNS0095614	Golden flower (tetraploid) 2	1.615
	CNS0095615	Golden flower (tetraploid) 3	0.433
CRA001975	CRR073297	Stem 1	5.237
	CRR073298	Stem 2	4.619
	CRR073299	Stem 3	6.871
	CRR073300	Leaf 1	1.977
	CRR073301	Leaf 2	1.965
	CRR073302	Leaf 3	2.488
	CRR073303	Juvenile bud 1	1.365
	CRR073304	Juvenile bud 2	2.599
	CRR073305	Juvenile bud 3	1.444
	CRR073306	Third green 1	6.285
	CRR073307	Third green 2	2.279
	CRR073308	Third green 3	3.525
	CRR073309	Second white 1	2.367
	CRR073310	Second white 2	2.016
	CRR073311	Second white 3	0.727
	CRR073312	Silver flowering 1	0.296
	CRR073313	Silver flowering 2	0.445
	CRR073314	Silver flowering 3	0.278
	CRR073315	Gold flowering 1	0.537
	CRR073316	Gold flowering 2	0.948
	CRR073317	Gold flowering 3	1.549
	CRR073318	Tawny withering 1	25.095
	CRR073319	Tawny withering 2	10.431
	CRR073320	Tawny withering 3	24.241