Gene detail

Detail information of GWHGAAZE024593

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10222.1	0	unnamed protein product [Coffea canephora]
COG	YP_007065849.1	2E-117	Delta-12 acyl-phospholipid desaturase
Swissprot	tr\|P48627\|FAD6C_BRANA	0	Omega-6 fatty acid desaturase, chloroplastic (Precursor)
trEMBL	tr\|A0A068UPL7\|A0A068UPL7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313\|EMBL:CDP10222.1}
TAIR10	AT4G30950.1	0	fatty acid desaturase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45794317	45799914	+
GWHAAZE00000007	mRNA	45794317	45799914	+
GWHAAZE00000007	exon	45794317	45794559	+
GWHAAZE00000007	exon	45794966	45795109	+
GWHAAZE00000007	exon	45796305	45796540	+
GWHAAZE00000007	exon	45797110	45797232	+
GWHAAZE00000007	exon	45797326	45797503	+
GWHAAZE00000007	exon	45797987	45798105	+
GWHAAZE00000007	exon	45798904	45799018	+
GWHAAZE00000007	exon	45799753	45799914	+
GWHAAZE00000007	CDS	45794317	45794559	+
GWHAAZE00000007	CDS	45794966	45795109	+
GWHAAZE00000007	CDS	45796305	45796540	+
GWHAAZE00000007	CDS	45797110	45797232	+
GWHAAZE00000007	CDS	45797326	45797503	+
GWHAAZE00000007	CDS	45797987	45798105	+
GWHAAZE00000007	CDS	45798904	45799018	+
GWHAAZE00000007	CDS	45799753	45799914	+

Transcript Sequence
>GWHTAAZE024627 ACAGGCACATGTTATTTGAAGTGGGAAGGGCTTCCACAGAGAAGAAGCAAAAATCAGAGATATTTAATTCCCTTGAGAAAGACTAAAATTATTCAAGCTGTTGCAGTGCCGGTTGCACCATCTCCATCAGAAAGTGCAGAGCATAGGAAAAATTTAAGTGAAAGTTATGGTTTTAGGCAAATTGGAGAACCTCTTCCAGATAACATTACCCTGAAGGACATTATTTCAACCCTTCCCAAAAAGGTATTTGAGATTGATGATGTGAAAGCATGGAAATCGGTTTTGATCTCTGCAACTTCATATGCGTTAGGGCTCTTTATGATCTCCAAAGCTCCTTGGTATTTACTTCCTCTTGCTTGGGCATGGACTGGAACTGCAATCACAGGGTTTCCTTCAAGACTTTTATATAAGCTGTACATTAGGCCAACTTTTTTTTTTCTTATTCCTTCCTCTCCCCCCTTGCCCCAAAAGTTTTTTGTTATAGGACATGACTGTGCACATAAATCATTCTCACGGAACAAGTTAGTGGAAGACATTGTTGGGACTCTAGCGTTTTTGCCCTTGATATACCCTTATGAGCCATGGCGGTTCAAGCACGATCGCCACCATGCAAAAACAAACATGTTGGATGAAGATACAGCTTGGCACCCTGTTATAAAAGAGGAGTTTGATTCGGCCCCACTTTTGCGAAAGGCAATTATATTTGGATACGGCCCAATTCGGCCATGGATGTCTATAGCTCACTGGTTGATGTGGCACTTTGATTTAAAGAAGTTTAGGCCGAATGAAATCAAAAGGGTGCAAATAAGCTTGGCATGCGTTTTTGCTTTCATGGCAGTTGGATGGCCGCTGATCGTTTTTAAGACAGGGATCATGGGATGGATCAAATTCTGGTTAATGCCGTGGTTAGGTTACCACTTTTGGATGAGTACTTTCACGATGGTCCATCATACGGCGCCTCACATACCATTTAAATCTTCGGATGAATGGAATGCATCTCAAGCTCAGCTTAATGGCACCGTTCACTGTGACTATCCTCGCTGGATAGAGATCCTTTGTCATGATATTAACGTGCATGTTCCCCACCACATCTCTTCGAGGATACCGAGCTACAATTTGCGGGCTGCTCATCAATCTCTCCAAGAAAACTGGGGAAAGTATATGAACGAGGCTACATGGAATTGGCGATTAATGAAGACCATAATAACAATATGTCACGTTTACAATAAAGAGAGAAACTACGTGGCATTTGATGAGATCGCCCCTGAAGAATCCCTGCCAATCACATTCCTCAAAAGAGTTATGCCCGATTATGCTTGA

Network for GWHGAAZE024593

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00487.25	FA_desaturase	159	387	2.50E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10255	FAD6, desA	Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.320
	SRR3591706	second leaf	138.620
	SRR3591707	mature leaf	104.106
	SRR3591708	Shoot apex	56.628
	SRR3591709	Stem	15.085
	SRR3591710	White floral bud	77.587
	SRR3591711	White flower	23.424
	SRR3591712	Green floral bud	37.410
	SRR3591713	Yellow flower	20.119
SRP173429	SRR8316895	Juvenile bud stage	22.547
	SRR8316896	Juvenile bud stage	23.738
	SRR8316897	Juvenile bud stage	18.961
	SRR8316894	Third green stage	9.524
	SRR8316900	Third green stage	34.162
	SRR8316901	Third green stage	32.733
	SRR8316898	Complete white stage	43.082
	SRR8316899	Complete white stage	56.514
	SRR8316903	Complete white stage	56.314
	SRR8316902	Silver flowering stage	64.399
	SRR8316904	Silver flowering stage	98.416
	SRR8316905	Silver flowering stage	47.077
	SRR8316906	Gold flowering stage	141.583
	SRR8316907	Gold flowering stage	119.093
	SRR8316908	Gold flowering stage	182.547
SRP132670	SRR6706286	Control	38.148
	SRR6706287	Light intensity 50%	36.438
	SRR6706288	Light intensity 20%	38.713
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.418
	CNS0095593	Slightly white alabastrum(diploid) 2	19.269
	CNS0095594	Slightly white alabastrum(diploid) 3	19.473
	CNS0095595	Whole white alabastrum(diploid) 2	21.298
	CNS0095596	Whole white alabastrum(diploid) 3	18.919
	CNS0095597	Whole white alabastrum(diploid) 4	16.079
	CNS0095598	Silvery flower (diploied) 1	27.995
	CNS0095599	Silvery flower (diploied) 2	28.599
	CNS0095600	Silvery flower (diploied) 3	51.735
	CNS0095601	Golden flower (diploid) 1	19.653
	CNS0095602	Golden flower (diploid) 2	29.760
	CNS0095603	Golden flower (diploid) 3	29.061
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.532
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.208
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.835
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.940
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.795
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.507
	CNS0095610	Silvery flower (tetraploid) 1	25.550
	CNS0095611	Silvery flower (tetraploid) 2	24.635
	CNS0095612	Silvery flower (tetraploid) 3	35.056
	CNS0095613	Golden flower (tetraploid) 1	8.809
	CNS0095614	Golden flower (tetraploid) 2	25.485
	CNS0095615	Golden flower (tetraploid) 3	9.218
CRA001975	CRR073297	Stem 1	30.211
	CRR073298	Stem 2	30.957
	CRR073299	Stem 3	35.283
	CRR073300	Leaf 1	26.644
	CRR073301	Leaf 2	26.699
	CRR073302	Leaf 3	30.568
	CRR073303	Juvenile bud 1	34.853
	CRR073304	Juvenile bud 2	40.875
	CRR073305	Juvenile bud 3	21.742
	CRR073306	Third green 1	222.912
	CRR073307	Third green 2	178.739
	CRR073308	Third green 3	174.778
	CRR073309	Second white 1	121.948
	CRR073310	Second white 2	131.909
	CRR073311	Second white 3	110.696
	CRR073312	Silver flowering 1	65.694
	CRR073313	Silver flowering 2	41.635
	CRR073314	Silver flowering 3	53.382
	CRR073315	Gold flowering 1	86.103
	CRR073316	Gold flowering 2	101.910
	CRR073317	Gold flowering 3	66.336
	CRR073318	Tawny withering 1	17.619
	CRR073319	Tawny withering 2	37.364
	CRR073320	Tawny withering 3	9.681