Gene detail

Detail information of GWHGAAZE024573

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002307856.1	0	ATPase 6 family protein [Populus trichocarpa]
COG	YP_005270382.1	1E-159	plasma-membrane proton-efflux P-type ATPase
Swissprot	tr\|Q9M2A0\|PMA8_ARATH	0	ATPase 8, plasma membrane-type
trEMBL	tr\|B9HCD3\|B9HCD3_POPTR	0	ATPase 6 family protein {ECO:0000313\|EMBL:EEE91379.1}
TAIR10	AT3G42640.1	0	H(+)-ATPase 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45327738	45335208	-
GWHAAZE00000007	mRNA	45327738	45335208	-
GWHAAZE00000007	exon	45327738	45328036	-
GWHAAZE00000007	exon	45328938	45329247	-
GWHAAZE00000007	exon	45329475	45329579	-
GWHAAZE00000007	exon	45329667	45329789	-
GWHAAZE00000007	exon	45330075	45330194	-
GWHAAZE00000007	exon	45330634	45330960	-
GWHAAZE00000007	exon	45331476	45331790	-
GWHAAZE00000007	exon	45332280	45332417	-
GWHAAZE00000007	exon	45333642	45333740	-
GWHAAZE00000007	exon	45334087	45334206	-
GWHAAZE00000007	exon	45335158	45335208	-
GWHAAZE00000007	CDS	45335158	45335208	-
GWHAAZE00000007	CDS	45334087	45334206	-
GWHAAZE00000007	CDS	45333642	45333740	-
GWHAAZE00000007	CDS	45332280	45332417	-
GWHAAZE00000007	CDS	45331476	45331790	-
GWHAAZE00000007	CDS	45330634	45330960	-
GWHAAZE00000007	CDS	45330075	45330194	-
GWHAAZE00000007	CDS	45329667	45329789	-
GWHAAZE00000007	CDS	45329475	45329579	-
GWHAAZE00000007	CDS	45328938	45329247	-
GWHAAZE00000007	CDS	45327738	45328036	-

Transcript Sequence
>GWHTAAZE024607 ATGGCCTCCACCATCTCCTTGGAAGCTGTCAAGAATGAACAAGTTGACCTTGAGCGCATCCCAATTGAGGAAGTGTTTGAGCATCTGAAATGTACAAAGGAGGGTTTGTCCTCAGAAGAAGGGGCTCAAAGGCTCCAAATCTTTGGCCCCAACAAACTTGAGGAGAAAAAGGAATGCAAGGTCCTCAAATTTCTGGGATTCATGTGGAATCCCCTATCATGGGTTATGGAGTCTGCGGCTATTATGGCCATTGTTTTGGCCAATGGTGGGGGGAAACCTCCAGACTGGCAAGACTTTGTTGGTATAGTAGTCCTGCTGCTTATCAACTCAACTATAAGCTTCATTGAAGAAAACAATGCAGGCAATGCAGCTGCTGCTCTTATGGCCGGTCTCGCCCCTAAATGCAAGGTATTGAGAGATGGAAAATGGAGCGAAGAAGACGCTGCAATTCTCGTACCTGGAGATTTGATCAGTGTGAAGCTCGGAGATATTATACCAGCCGATGCTCGTCTGCTCGAAGGAGATCCCTTAAAAATTGACCAGTCTGCCCTCACCGGTGAGTCCTTGCCGGTGACTAAGAACCCCGGTGATGAAGTCTTCTCTGGTTCAACCTGCAAGCAAGGAGAAATTGAAGCAGTTGTTATTGCAACCGGTGTCCATACTTTCTTTGGCAAGGCTGCACACCTTGTTGATAGCACTAACCAAGTGGGTCATTTCCAAAAGGTTTTGACTTCCATTGGTAACTTCTGCATTTGCTCCATTGCTATTGGTATGTTTATTGAGTTAGTGGTGATGTACCCAATTCAGCACAGAAATTACAGAGAAGGCATCGACAATCTGTTGGTCCTTCTCATCGGAGGTATCCCAATTGCCATGCCCACAGTTTTGTCTGTGACAATGGCCATCGGGTCCCACCGGCTTTCTCAACAAGGTGCCATTACCAAGAGGATGACTGCTATTGAGGAAATGGCTGGGATGGATGTCTTATGTAGTGACAAGACTGGGACACTTACTCTAAACAAGCTCAACGTCGACAAATCCATGATTGAGGTATTCCCTAGAGATATGGACAAGGAATCTTTGATGTTGTTTGCCGCTAGGGCTTCTAGAGTTGAAAATCAAGATGCCATTGATGCTTCAATTGTTGGAATGCTGAAAGACCCCAAGGAGGCAAGAGCCGGAATCATAGAGGTACATTTTCTGCCCTTTAATCCCGTAGAAAAGCGCACTGCAATCACATACTACGATTCTAATGGGAATTGGTATAGAAGTAGCAAGGGTGCCCCTGAGCAGATTATTGATCTCTGTGATCTCAAGGGAGAAACAAGGAAGAAGGCCCATGAAATCATTGACAATTTCGCCAATCGAGGCCTTCGTTCTCTGGGTGTTGCTCGACAGACAATACCAGAAAAGACCAAGGAGAGTGCAGGAGGACCATGGGAGTTTGTAGGTTTATTACCTCTTTTTGATCCACCGAGGCATGATAGTGCGGAGACGATCCGTAAAGCACTTGAGCTTGGTGTGAATGTCAAAATGATCACCGGTGACCAGCTTGCCATAGGTAAAGAGACCGGCCGTAGGCTTGGCATGGGAACCAACATGTACCCCTCCTCTTCCCTTCTTGGCCAGAGCAAGGACGAGTCCATTGCTTCCATTCCCGTCGAAGAGCTCATTGAACAGGCTGATGGCTTCGCCGGTGTCTTCCCTGTAGGGATTCTGGCTGTCTCAATGGAGGCAATTTCACATTTAATCTCTGCAACCAGGCAACCAGCCATCGTCAGTACTTTTCCTCTTCAACAACAGTGGGTTATTATGGAAAATAGCACTAATATTCACTTCCACCTTAGCAATCATTTGAGCAGCAAAGGCTCTCCTATTATCAAATCTGCTCCTATTTCTATTGATCCACAGTTCCCAACATACACAGGTAGGAATAAGAGACAATATAGCTTTATGGCAAGGGGATCTCACCTTGGCCATCCACCAAGCACTAAGCTTAAGCTGTAA

Network for GWHGAAZE024573

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00690.27	Cation_ATPase_N	20	82	2.60E-12
PF00122.21	E1-E2_ATPase	132	309	2.70E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01535	PMA1, PMA2	Metabolic pathways	map01100
K01535	PMA1, PMA2	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0120029	biological_process	proton export across plasma membrane
GO:0016021	cellular_component	integral component of membrane
GO:0008553	molecular_function	proton-exporting ATPase activity, phosphorylative mechanism
GO:0000166	molecular_function	nucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.148
	SRR3591706	second leaf	0.063
	SRR3591707	mature leaf	0.005
	SRR3591708	Shoot apex	0.238
	SRR3591709	Stem	0.865
	SRR3591710	White floral bud	174.126
	SRR3591711	White flower	10.010
	SRR3591712	Green floral bud	83.510
	SRR3591713	Yellow flower	5.189
SRP173429	SRR8316895	Juvenile bud stage	0.475
	SRR8316896	Juvenile bud stage	10.332
	SRR8316897	Juvenile bud stage	7.209
	SRR8316894	Third green stage	7.536
	SRR8316900	Third green stage	40.942
	SRR8316901	Third green stage	37.549
	SRR8316898	Complete white stage	0.034
	SRR8316899	Complete white stage	0.526
	SRR8316903	Complete white stage	0.397
	SRR8316902	Silver flowering stage	1.690
	SRR8316904	Silver flowering stage	3.598
	SRR8316905	Silver flowering stage	0.970
	SRR8316906	Gold flowering stage	1.022
	SRR8316907	Gold flowering stage	0.625
	SRR8316908	Gold flowering stage	0.348
SRP132670	SRR6706286	Control	34.402
	SRR6706287	Light intensity 50%	38.773
	SRR6706288	Light intensity 20%	33.758
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.581
	CNS0095593	Slightly white alabastrum(diploid) 2	29.584
	CNS0095594	Slightly white alabastrum(diploid) 3	31.254
	CNS0095595	Whole white alabastrum(diploid) 2	112.560
	CNS0095596	Whole white alabastrum(diploid) 3	117.904
	CNS0095597	Whole white alabastrum(diploid) 4	180.676
	CNS0095598	Silvery flower (diploied) 1	7.316
	CNS0095599	Silvery flower (diploied) 2	30.242
	CNS0095600	Silvery flower (diploied) 3	7.186
	CNS0095601	Golden flower (diploid) 1	8.488
	CNS0095602	Golden flower (diploid) 2	4.815
	CNS0095603	Golden flower (diploid) 3	4.994
	CNS0095604	Slightly white alabastrum(tetraploid) 1	84.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	86.578
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.124
	CNS0095607	Whole white alabastrum(tetraploid) 1	186.341
	CNS0095608	Whole white alabastrum(tetraploid) 2	234.425
	CNS0095609	Whole white alabastrum(tetraploid) 3	98.777
	CNS0095610	Silvery flower (tetraploid) 1	5.119
	CNS0095611	Silvery flower (tetraploid) 2	21.362
	CNS0095612	Silvery flower (tetraploid) 3	52.579
	CNS0095613	Golden flower (tetraploid) 1	6.325
	CNS0095614	Golden flower (tetraploid) 2	1.181
	CNS0095615	Golden flower (tetraploid) 3	25.362
CRA001975	CRR073297	Stem 1	16.984
	CRR073298	Stem 2	16.546
	CRR073299	Stem 3	6.336
	CRR073300	Leaf 1	113.804
	CRR073301	Leaf 2	67.126
	CRR073302	Leaf 3	33.139
	CRR073303	Juvenile bud 1	106.081
	CRR073304	Juvenile bud 2	72.873
	CRR073305	Juvenile bud 3	12.139
	CRR073306	Third green 1	45.835
	CRR073307	Third green 2	48.663
	CRR073308	Third green 3	43.425
	CRR073309	Second white 1	3.201
	CRR073310	Second white 2	14.256
	CRR073311	Second white 3	16.067
	CRR073312	Silver flowering 1	71.998
	CRR073313	Silver flowering 2	68.653
	CRR073314	Silver flowering 3	35.918
	CRR073315	Gold flowering 1	52.115
	CRR073316	Gold flowering 2	16.824
	CRR073317	Gold flowering 3	8.995
	CRR073318	Tawny withering 1	60.230
	CRR073319	Tawny withering 2	56.895
	CRR073320	Tawny withering 3	49.427