Gene detail

Detail information of GWHGAAZE024564

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14272.1	0	unnamed protein product [Coffea canephora]
COG	YP_008432137.1	4E-126	Minichromosome maintenance protein MCM
Swissprot	tr\|O80786\|MCM5_ARATH	0	DNA replication licensing factor MCM5
trEMBL	tr\|A0A068V150\|A0A068V150_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_81 {ECO:0000313\|EMBL:CDP14272.1}
TAIR10	AT2G07690.1	0	Minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45209336	45218012	+
GWHAAZE00000007	mRNA	45209336	45218012	+
GWHAAZE00000007	exon	45209336	45209638	+
GWHAAZE00000007	exon	45210617	45210760	+
GWHAAZE00000007	exon	45210868	45211047	+
GWHAAZE00000007	exon	45211132	45211230	+
GWHAAZE00000007	exon	45211580	45211716	+
GWHAAZE00000007	exon	45211837	45211942	+
GWHAAZE00000007	exon	45212288	45212422	+
GWHAAZE00000007	exon	45212726	45212803	+
GWHAAZE00000007	exon	45213096	45213200	+
GWHAAZE00000007	exon	45213355	45213446	+
GWHAAZE00000007	exon	45214147	45214279	+
GWHAAZE00000007	exon	45214382	45214477	+
GWHAAZE00000007	exon	45214840	45214931	+
GWHAAZE00000007	exon	45215012	45215102	+
GWHAAZE00000007	exon	45216473	45216582	+
GWHAAZE00000007	exon	45216979	45217108	+
GWHAAZE00000007	exon	45217219	45217320	+
GWHAAZE00000007	exon	45217929	45218012	+
GWHAAZE00000007	CDS	45209336	45209638	+
GWHAAZE00000007	CDS	45210617	45210760	+
GWHAAZE00000007	CDS	45210868	45211047	+
GWHAAZE00000007	CDS	45211132	45211230	+
GWHAAZE00000007	CDS	45211580	45211716	+
GWHAAZE00000007	CDS	45211837	45211942	+
GWHAAZE00000007	CDS	45212288	45212422	+
GWHAAZE00000007	CDS	45212726	45212803	+
GWHAAZE00000007	CDS	45213096	45213200	+
GWHAAZE00000007	CDS	45213355	45213446	+
GWHAAZE00000007	CDS	45214147	45214279	+
GWHAAZE00000007	CDS	45214382	45214477	+
GWHAAZE00000007	CDS	45214840	45214931	+
GWHAAZE00000007	CDS	45215012	45215102	+
GWHAAZE00000007	CDS	45216473	45216582	+
GWHAAZE00000007	CDS	45216979	45217108	+
GWHAAZE00000007	CDS	45217219	45217320	+
GWHAAZE00000007	CDS	45217929	45218012	+

Transcript Sequence
>GWHTAAZE024598 ATGTCTGGTTGGGACGAAGGTGCGATCTACTATAGCGACCAAGCTCAATTCCCCCGCGGCGGTGGAAACGGAGGCACAGGCGACCCCGAACAGGCAGCGAGCCGCCACACGGTACTCCGTAAGTTCAAAGAGTTCATACGAAACTTCGCACATCAGAATCAACCGAATGTGTTCCCTTACAGAGAAAGCCTCGTTCAGAACCCTAGGTACCTCCTCGTCAATCTCTCCGATCTCCTCAACTATGATAAAGACCAGGATCTTCGCGATTTGCTCCGCAAAAACCCCGCCGACTATCTTCCCCTGTTTGAAACCGCAGCAGCGGAAGTTCTAGCAAGTTTAAGGTCAAGGGTGGCCGGAGAGACTGGGGAAATGGAAGAGCCAGAGACAGGAGAAGTGCAGATTTTGTTGACATCCGAGGAAGATCCGGTGTCAATGCGATCACTGGGGGCACAATACATATCAAAATTGGTTAAGATATCTGGGATCACTATCGCTGCATCAAGGACCAAGGCCAAAGCTACTTATGTGACTTTGTTGTGTAAAAATTGTAAAAATGTGAAGGTTGTTCCTTGTCGTCCAGGGCTAGGTGGGGCAATTGTGCCACGTTCATGTGACCATGTGGCTCAGGTAGGGGAAGAATCATGCCCGTTAGATCCGTGGATTGTGGTTCCAGATAAAAGCAAGTATGTTGATCAGCAGACCCTGAAATTGCAAGAAAATCCTGAGGATGTTCCTACTGGGGAGCTACCGAGGAACATTCTTCTATCTGTTGATCGCCATCTTGTGCAAACAATTGTGCCGGGGACAAGATTGACCATAATGGGAATTTACAGCATCTTTCAAGCTTCCAACTCATCCTCCAACCACAAAGGAGCAGTTGCAGTTAGACAGCCTTATATAAGGGTTGTTGGCATAGAGGAAACTAATGAGGCTAAAACTCGGGGTCCTGCAAGTTTCTCCACAGATGAGATAGAAGAATTTAAAAAATTTGCATCAGAAGGTAATGCATATCAAAACCTCTGCTCCAAGATTGCTCCCTCCATCTTTGGTCATGATGATGTGAAGAAGGCTGTGGCTTGTCTCTTGTTTGGAGGATCGAGGAAGATTTTGCCAGATGGTGTGAAGTTAAGAGGTGATATCAATGTGTTGCTCTTGGGAGATCCATCCACTGCTAAATCACAGTTTCTTAAGTTTGTCGAGAAGACAGCTCCAGTAGCTGTATATACTTCTGGAAAAGGCTCATCAGCTGCTGGTCTTACTGCTTCAGTTATTCGAGACAGCAGTTCTCGGGAATTCTATCTGGAAGGAGGGGCCATGGTTTTGGCAGATGGAGGAGTTGTCTGCATTGATGAATTTGACAAGATGAGGCCAGAAGACAGAGTTGCAATTCACGAAGCCATGGAACAACAAACCATATCTATTGCCAAAGCGGGAATAACAACCGTTCTCAATTCTAGAACCTCTGTACTCGCAGCAGCTAACCCTCCATCAGGACGTTATGACGATCTTAAGACTGCTCAGGATAACATTGACATGCAAACAACAATTCTTTCGAGATTCGATCTAATATTCATTGTGAAAGATAACAGGGAGTTCAGTCGGGACATGGATATAGCTAGCCATGTCATCAAAATTCATGCGTCTGCTAACGCAAATACACGTGACAGAAAAGCTTCAAAAGGAGACAACTGGCTGAAGAGGTATATTCAATACTGCCGAACTGTATGCCACCCCCGTCTATCAGATTCCGCAGCCACATTATTGCAGGAGAGCTATGTTAAAATTAGACAGGACATGAGGCGACAGGCAAATGAAAATGGGGAAGCAGCTGCAGTTCCAATTACAGTAAGACAGCTGGAAGCTATTGTAAGGTTGAGCGAGGCACTTGCAAAAATGAAACTATCCCATGTTGCAAATGATAACCATGTTATGGAAGCTATAAGGCTTTTCAACAACGCTACAATGGATGCAGCAAGATCTGGTATAAATCAGCATATGAATCTCACTCCCGAGATGGCAAATGAGATAAAGCAAGCCGAAACACAAATAAAGAGAAGAATGGGAATCGGAAGCCACATATCCGAGAGAAGGCTAATTGACGAGCTTACAAGAATGGGCATCAATGAATCTATCGTAAGAAGAGCTCTGATAATTATGCACCAGAGAGACGAAGTTGAATACAAGAGAGAAAGGCGTGTCATCCTTCGCAAAGCTTAA

Network for GWHGAAZE024564

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14551.7	MCM_N	40	128	9.40E-12
PF17207.4	MCM_OB	145	280	6.10E-35
PF00493.24	MCM	324	546	5.40E-101
PF17855.2	MCM_lid	564	653	1.40E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02209	MCM5, CDC46	DNA replication	map03030
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0006270	biological_process	DNA replication initiation
GO:0005634	cellular_component	nucleus
GO:0042555	cellular_component	MCM complex
GO:0003677	molecular_function	DNA binding
GO:0005524	molecular_function	ATP binding
GO:0003688	molecular_function	DNA replication origin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.315
	SRR3591706	second leaf	5.913
	SRR3591707	mature leaf	0.965
	SRR3591708	Shoot apex	62.453
	SRR3591709	Stem	6.475
	SRR3591710	White floral bud	1.709
	SRR3591711	White flower	1.643
	SRR3591712	Green floral bud	2.946
	SRR3591713	Yellow flower	0.412
SRP173429	SRR8316895	Juvenile bud stage	10.321
	SRR8316896	Juvenile bud stage	10.247
	SRR8316897	Juvenile bud stage	4.829
	SRR8316894	Third green stage	2.235
	SRR8316900	Third green stage	3.292
	SRR8316901	Third green stage	1.314
	SRR8316898	Complete white stage	0.109
	SRR8316899	Complete white stage	1.278
	SRR8316903	Complete white stage	0.328
	SRR8316902	Silver flowering stage	0.156
	SRR8316904	Silver flowering stage	0.295
	SRR8316905	Silver flowering stage	0.053
	SRR8316906	Gold flowering stage	0.157
	SRR8316907	Gold flowering stage	0.226
	SRR8316908	Gold flowering stage	0.396
SRP132670	SRR6706286	Control	3.371
	SRR6706287	Light intensity 50%	4.331
	SRR6706288	Light intensity 20%	4.928
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.586
	CNS0095593	Slightly white alabastrum(diploid) 2	6.261
	CNS0095594	Slightly white alabastrum(diploid) 3	5.829
	CNS0095595	Whole white alabastrum(diploid) 2	2.428
	CNS0095596	Whole white alabastrum(diploid) 3	1.322
	CNS0095597	Whole white alabastrum(diploid) 4	1.128
	CNS0095598	Silvery flower (diploied) 1	6.811
	CNS0095599	Silvery flower (diploied) 2	12.068
	CNS0095600	Silvery flower (diploied) 3	1.920
	CNS0095601	Golden flower (diploid) 1	4.329
	CNS0095602	Golden flower (diploid) 2	2.140
	CNS0095603	Golden flower (diploid) 3	1.331
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.863
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.701
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.190
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.122
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.829
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.135
	CNS0095610	Silvery flower (tetraploid) 1	0.345
	CNS0095611	Silvery flower (tetraploid) 2	1.064
	CNS0095612	Silvery flower (tetraploid) 3	1.221
	CNS0095613	Golden flower (tetraploid) 1	0.315
	CNS0095614	Golden flower (tetraploid) 2	0.322
	CNS0095615	Golden flower (tetraploid) 3	0.157
CRA001975	CRR073297	Stem 1	20.664
	CRR073298	Stem 2	16.715
	CRR073299	Stem 3	22.630
	CRR073300	Leaf 1	2.210
	CRR073301	Leaf 2	1.780
	CRR073302	Leaf 3	2.350
	CRR073303	Juvenile bud 1	1.357
	CRR073304	Juvenile bud 2	0.294
	CRR073305	Juvenile bud 3	1.835
	CRR073306	Third green 1	0.324
	CRR073307	Third green 2	0.125
	CRR073308	Third green 3	0.777
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.009
	CRR073311	Second white 3	0.041
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.044
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.458
	CRR073316	Gold flowering 2	1.365
	CRR073317	Gold flowering 3	0.641
	CRR073318	Tawny withering 1	12.970
	CRR073319	Tawny withering 2	10.699
	CRR073320	Tawny withering 3	17.134