Gene detail

Detail information of GWHGAAZE024528

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275364.2	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Vitis vinifera]
COG	YP_004775215.1	5E-46	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	4E-128	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|F6H5Q2\|F6H5Q2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47523.1}
TAIR10	AT4G08850.1	7E-75	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	44289031	44292218	+
GWHAAZE00000007	mRNA	44289031	44292218	+
GWHAAZE00000007	exon	44289031	44289821	+
GWHAAZE00000007	exon	44289941	44291054	+
GWHAAZE00000007	exon	44291163	44291374	+
GWHAAZE00000007	exon	44292122	44292218	+
GWHAAZE00000007	CDS	44289031	44289821	+
GWHAAZE00000007	CDS	44289941	44291054	+
GWHAAZE00000007	CDS	44291163	44291374	+
GWHAAZE00000007	CDS	44292122	44292218	+

Transcript Sequence
>GWHTAAZE024562 ATGAGGGCTGTATGGTTGGCACTGGCAGCTATTATTACAGTTTCAGCAGCAGCAGCGGCAACATCTATTACTCCTAATAAATCTTCTTCAGAAGCAACACCATTGTCGTCGTCATGGTTAACAAGAGAGTCTGAAGCTCTAGCGGGTATCCGCTGGTGGTGGAATGTGGACCCTGCTACGAGCCATTGTAACTGGGAAGGCATTGGTTGCAATGAGGCAGGAAGTGTCACTTCTATAACCTGCCCTGCAAGTTCTCATGGTTATGATGGAGTTGATATACATGAGCTTAACTTGTCTTCATTTCAAAACCTTGAAAGCCTTCATCTTAATAATTGTGGGCTTAAAGGAACCATTCCATATGAAATCGGCATGCTTTCCAAACTGACCTACCTTTTTCTTTCTCTCAATTCTCTTTCAGGTAACCTGCCTCTTTCACTGGCCAAACTCACCAACCTAACGTGCATCAACATTTCTCATAATAATATGAGTGGCTTCATTCCATTTGAAGAATTAGGGAATCTAAAGAATTTAATAGTTCTGAACCTTGCTAGCAACCTATTTTCTGGTCCAATCCCTTCATCAGTTGGTTTCTTAATCAATTTAACTTTCTTATTCCTTGATGGGAATAGACTCACTGGGTCCATCCCATCCAAATTAGGAAATCTGAAGAGTCTTTCATTTATAGACCTTCGTCACAACGTCTTTTCTGGTCCAATCCCTTCATCTATCTGCTTCTTAACCCATTTAACCGCCTTGGAACTTTCTGGGAACCAACTCACTGGATCTATTCCGAATCAACTCACTGGATTCATTCCATTAGAAATAGGGAATCTTAGATATCTCAATTATTTGAGCCTTGAGCAGAACAACCTTTCAGGTACCATCCCTTCAACTATGGGACTATTGACTAGTTTAGCAGTTCTAGACCTTTCTTACAATTTATTTAACGGCACCATACCTGCTAATCTTTCTTCCTTGTCAAACTTAGACTACCTCAATCTCTCCTACAATAAACTTGTTGGCTCTATCCCCACCACCCTTTGGAAATTGTGCTCCAACTCGGAAATACAGTTGCTGGGAAATGGTGGCCTGGAGGGCAACCTTAATTGTGAATTAGAAACGAAGGACCACAACAAGAGTAGTAGTTTGTCTAAAGAAAAAAAGAGGAGGAATGGAGTTGGGCACTTTATCCCCATTATAATTATCCTAGTCGCCATTTCACTTGCCTTGTTCATCGTCCTTGCCCGCAAATTCTTTTCTTGGCATAATAAGGCTATGAAAAGCAAAAGCTTGTCAGTAACAACAAAGCATGGAAATTTTTCCTCCATATGGAATTATGATGGGACAATTGCATATGAAGACATCATCAGATCAACAAATGACTTTGATATCGCACATTGTATTGGAACTGGCGGTTATGGCAGCGTCTATAGGGCTCAACTGCCAAGTGGCAAAGTAATCGCCTTGAAGAAACTTCATCGTTTTGAAGCCGAGGAGCCAGCTTTCGACAAAAGCTTTAAGAATGAAGTACAAGTGTTATCAAATATAAGACATAAAAACATTGTCAAGCTTTATGGGTTTTGTTTGCACAACCGGTGCATGTTCCTGGTTTACGAATACATGGAAAGAGGAAGCTTATTCTGTGCCCTAAGAGATGATGCTGAGGCTGTAGAATTGGATTGGATTAAAAGGGTGAACGTCGTTAAAGGCATAGCACATGCTTTATCTTACATGCATCACGATTGTAGTCCACCTATTGTTCATCGGGATATTTCAAGTAATAATGTTCTCTTGAACTCAAAACTAGATGCATTTGTAGCCGACTTTGGTACAGCTAGATTGCTATCTCCTGATTCGATCCAACCAAACCTTAATTGCAGGCACCTCACGGATATATTGCTCCAGCTTGCCTACACCATGGTGGTTACAGAAAAATGCGATGTTTATAGCTTTGGCGTGGTGGCACTTGAAATAATAATGGGAAGGCATCCGGGTGATCTCCTCTCGTCATTAACATCTCCATTTACCCAAAATCCAATGGTGAATGATGTGTTGGACCCACGGCTCTCACATCCAACAGATCGATTGGTTGAATGGGACATTGTTATGGTTATGAGTCCTCTAGTTCTCGCATCAGTAGATGCCACTACTAATATTGTCTCAGCAGCCACTTCTAAAGCAGAGGGCAAAACTCTACTTGACAGCGGATGGTAG

Network for GWHGAAZE024528

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	200	259	1.00E-06
PF13855.7	LRR_8	280	339	1.90E-07
PF00069.26	Pkinase	465	665	7.40E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.266
	SRR3591706	second leaf	0.025
	SRR3591707	mature leaf	0.257
	SRR3591708	Shoot apex	0.166
	SRR3591709	Stem	0.932
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.055
	SRR3591712	Green floral bud	0.021
	SRR3591713	Yellow flower	0.101
SRP173429	SRR8316895	Juvenile bud stage	0.142
	SRR8316896	Juvenile bud stage	0.025
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.030
	SRR8316900	Third green stage	0.108
	SRR8316901	Third green stage	0.032
	SRR8316898	Complete white stage	0.057
	SRR8316899	Complete white stage	0.051
	SRR8316903	Complete white stage	0.036
	SRR8316902	Silver flowering stage	0.078
	SRR8316904	Silver flowering stage	0.108
	SRR8316905	Silver flowering stage	0.179
	SRR8316906	Gold flowering stage	0.154
	SRR8316907	Gold flowering stage	0.086
	SRR8316908	Gold flowering stage	0.067
SRP132670	SRR6706286	Control	0.060
	SRR6706287	Light intensity 50%	0.127
	SRR6706288	Light intensity 20%	0.065
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.067
	CNS0095593	Slightly white alabastrum(diploid) 2	0.081
	CNS0095594	Slightly white alabastrum(diploid) 3	0.020
	CNS0095595	Whole white alabastrum(diploid) 2	0.037
	CNS0095596	Whole white alabastrum(diploid) 3	0.052
	CNS0095597	Whole white alabastrum(diploid) 4	0.028
	CNS0095598	Silvery flower (diploied) 1	0.001
	CNS0095599	Silvery flower (diploied) 2	0.076
	CNS0095600	Silvery flower (diploied) 3	0.100
	CNS0095601	Golden flower (diploid) 1	0.238
	CNS0095602	Golden flower (diploid) 2	0.156
	CNS0095603	Golden flower (diploid) 3	0.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.015
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.104
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.066
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.072
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.063
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.051
	CNS0095610	Silvery flower (tetraploid) 1	0.015
	CNS0095611	Silvery flower (tetraploid) 2	0.024
	CNS0095612	Silvery flower (tetraploid) 3	0.683
	CNS0095613	Golden flower (tetraploid) 1	0.027
	CNS0095614	Golden flower (tetraploid) 2	0.038
	CNS0095615	Golden flower (tetraploid) 3	0.082
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.026
	CRR073299	Stem 3	0.019
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.010
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.213
	CRR073307	Third green 2	0.363
	CRR073308	Third green 3	0.291
	CRR073309	Second white 1	0.134
	CRR073310	Second white 2	0.396
	CRR073311	Second white 3	0.304
	CRR073312	Silver flowering 1	0.269
	CRR073313	Silver flowering 2	0.218
	CRR073314	Silver flowering 3	0.054
	CRR073315	Gold flowering 1	0.038
	CRR073316	Gold flowering 2	0.196
	CRR073317	Gold flowering 3	0.010
	CRR073318	Tawny withering 1	0.530
	CRR073319	Tawny withering 2	1.298
	CRR073320	Tawny withering 3	0.006