Gene detail

Detail information of GWHGAAZE024525

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277606.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 isoform X1 [Vitis vinifera]
COG	YP_004775215.1	9E-63	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|F6H5Q7\|F6H5Q7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47528.1}
TAIR10	AT4G08850.1	9E-147	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	44261424	44263980	+
GWHAAZE00000007	mRNA	44261424	44263980	+
GWHAAZE00000007	exon	44261424	44263416	+
GWHAAZE00000007	exon	44263628	44263980	+
GWHAAZE00000007	CDS	44261424	44263416	+
GWHAAZE00000007	CDS	44263628	44263980	+

Transcript Sequence
>GWHTAAZE024559 ATGTTAAACTTTTCTTCACTTCCCAATCTTGAAATCCTTAATCTTACCGACTGCAAGCTTAATGGAGCCATCCCATACCAAATTGGTCTGCTTTCCAAACTCACTCACCTTAGTCTCCCTTCCAATTCTCTTACAGGGAAACTACCTTTTTCGCTCAGTAACCTCTCCCAACTAATATGGCTAGACCTCGCCAATAATGGTATCTATGGTTCCATTCCCTTTGAAATGGGTAATACTCTAAGGAAACTTGATTATCTTGATCTTAGTAACAACAAGTTTACCGGCCCAATTCCTTCCTCTTTCGGTTTCTTGACCAACCTCACCGTTCTTTACCTTAAAGATAATGGAGTTTATGGTCGAATCCCTCTAGAGCTCGGGAATTTAACAAACTTAGTTGAACTCGACCTCAGTCATAACTACCTCACAGGTCCAATCCCTTGGACGATGGGTCAATTGACCCGGCTTAGTAATTTGCATCTTGACTCAAACCAAATCGATGGCTACATCCCACCTACCATTGGTAAATTGGAGAACTTATTCCATTTGAGCATTTCCGCTAATCAGCTTACCCATGTCATCCCAAAAGAGCTAGGAAATCTAACGAATTTAGTCGAATTGGATCTCAGTAATAACCAACTGGTCGGCCCAATCCCTTCTGCTATAGGTGAAATAACTAGTATTTCTAGCCTTCAGCTAGATTTTAATCTTATCGACGGTTCTATCCCGGCCAGCTTTGGTAAATTAGGAAACATGTACCTCTTAAGCATGTCTTCAAATCGACTCTCACATGTCGTCCCTGAAGAATTGTGGAATCTAACAAATTTGATCGAACTTGATCTTAGTCATAACCAGCTAAGTGGACCAATCACTTCATCATTTGGTCAATTAACAACCCTCAATTATCAGCACCTTGATCTCTCCTCCAACCAACTTTCGGGCAAGATGCCAACTTTTAACGACCCGTGTGATCTTCAGTACTTAGAATTTTCTCAGAATTTGCTGAGCGGAGAGATCCCAAAAGAGCTTCAAGTGTGCAGCTACTTGGAACATTTGGGGTTAAGTAGTAACAATTTGGGTGGAAAAATACCCACTGAGCTCTCGAATTTGTTAACCTTGGAGTACTTGAATCTCTCTCACAACAATCTTTTTGGCGCAATCCCCAAGGATGTTTGTAAATTCTGTGACAATACAACAATGGATTTTTCGCACAATGCCTTAGAGGGGCAACTGGCTAGTCAACGGATGCCAAAGGATCGAAACAATAGAAACCGAGTCGTGAAATATTCCCTCCTCATTTTGCTTCCAACTATCATTTCCTCCTTGTTAGTACTCGTGTGTTTTTTCTTCGGCTGGCGCAAGGCCGGAAAAATTCAAAGCGAGGAAAAAGAAATGTTGAAGAATGGAAATATGTGCTCGATATGGAACTTTGATGGCAGAATCGCGTATGAAGATATCCTTAAAGCAACAAACGACTTTGACATCAGATACTGCATCGGCACTGGTGGTTACGGCAGCGTTTACAAAGCTCAGCTACCTAGTGGCAAAGTGATCGCCTTAAAAAAACTCCACCGTTTGGAAGCCGAGGATCCAATTTTTGACAAGTGTTTCAAGAACGAGGTGCAAGTGTTGTCAAATATAAGACACAGAAACATCGTGAAGTTATACGGGTTTTGTTTGCACAACCGATGCATGTTCTTGGTTTACGAGTTTATGGAAAAGGGAAGCTTATTCTGTGTCCTCAGAGATGATGTTGAAGCAGTTGAAATGGACTGGACAAAGAGAGTGGACATTGTTAAGGGGATAGCGCGTGCCTTATCGTACATGCATCATGACTGCACCCCAACCATTGTCCACCGTGATATTTCAAGCAATAACATTCTCTTGAACTCCAACTTCGAAGTGTTTGTGGCTGACTTTGGCGCTGCTAGACTTCTTTATCCCGATTTATCCAACCAAACTATCATTGCAGGCACATTAGGATATGTCGCTCCAGAACTTGCTTACACCATGGCTGTGACTGAAAAATGTGATGTCTATAGCTTTGGGGTGGTGGCACTTGAAATAATCATGGGAAGGCATCCTGGAGATCTCATTTCATCATTTACGTCTCTGTCAACTCAAAATCCAACGGTGAATGATGTTTTGGACCCACGGCTGCCATGTCCAGCGGATCGACTTGTTGAATGGGATATTGTTATGGTTATGAGGATGGCATCTTCATGCTTATGTTCTAATCCAAAATCACGGCCAACAATGCGAAGCGTGTCACAGGAGTTTCTAGCTCACAGGACGCCACTTCCCAAACCTCTTCACTTGATTTCACTGTTGGAGCTGTGGAATCACTAA

Network for GWHGAAZE024525

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	81	141	5.20E-08
PF13855.7	LRR_8	154	213	1.40E-09
PF13855.7	LRR_8	227	285	1.70E-09
PF00560.34	LRR_1	372	392	0.28
PF00069.26	Pkinase	497	757	7.60E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.804
	SRR8316896	Juvenile bud stage	1.049
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.287
	SRR8316900	Third green stage	0.360
	SRR8316901	Third green stage	0.528
	SRR8316898	Complete white stage	0.193
	SRR8316899	Complete white stage	1.178
	SRR8316903	Complete white stage	0.310
	SRR8316902	Silver flowering stage	0.610
	SRR8316904	Silver flowering stage	0.431
	SRR8316905	Silver flowering stage	0.429
	SRR8316906	Gold flowering stage	2.014
	SRR8316907	Gold flowering stage	1.983
	SRR8316908	Gold flowering stage	0.833
SRP132670	SRR6706286	Control	0.726
	SRR6706287	Light intensity 50%	0.404
	SRR6706288	Light intensity 20%	0.197
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.574
	CNS0095593	Slightly white alabastrum(diploid) 2	0.970
	CNS0095594	Slightly white alabastrum(diploid) 3	0.812
	CNS0095595	Whole white alabastrum(diploid) 2	0.328
	CNS0095596	Whole white alabastrum(diploid) 3	0.054
	CNS0095597	Whole white alabastrum(diploid) 4	0.156
	CNS0095598	Silvery flower (diploied) 1	1.568
	CNS0095599	Silvery flower (diploied) 2	1.663
	CNS0095600	Silvery flower (diploied) 3	0.579
	CNS0095601	Golden flower (diploid) 1	2.614
	CNS0095602	Golden flower (diploid) 2	1.421
	CNS0095603	Golden flower (diploid) 3	1.734
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.024
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.122
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.308
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.120
	CNS0095610	Silvery flower (tetraploid) 1	0.023
	CNS0095611	Silvery flower (tetraploid) 2	0.033
	CNS0095612	Silvery flower (tetraploid) 3	0.031
	CNS0095613	Golden flower (tetraploid) 1	0.016
	CNS0095614	Golden flower (tetraploid) 2	0.121
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.501
	CRR073298	Stem 2	0.724
	CRR073299	Stem 3	0.220
	CRR073300	Leaf 1	0.286
	CRR073301	Leaf 2	0.451
	CRR073302	Leaf 3	0.026
	CRR073303	Juvenile bud 1	0.122
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.039
	CRR073306	Third green 1	2.374
	CRR073307	Third green 2	0.875
	CRR073308	Third green 3	1.217
	CRR073309	Second white 1	0.444
	CRR073310	Second white 2	1.364
	CRR073311	Second white 3	1.618
	CRR073312	Silver flowering 1	1.419
	CRR073313	Silver flowering 2	0.732
	CRR073314	Silver flowering 3	0.707
	CRR073315	Gold flowering 1	0.376
	CRR073316	Gold flowering 2	1.190
	CRR073317	Gold flowering 3	1.047
	CRR073318	Tawny withering 1	0.606
	CRR073319	Tawny withering 2	2.180
	CRR073320	Tawny withering 3	0.142