Gene detail

Detail information of GWHGAAZE024501

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011078532.1	0	PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic [Sesamum indicum]
COG	YP_005440390.1	5E-98	monogalactosyldiacylglycerol synthase family protein
Swissprot	tr\|Q9SI93\|MGDG3_ARATH	0	Monogalactosyldiacylglycerol synthase 3, chloroplastic (Precursor)
trEMBL	tr\|A0A022R431\|A0A022R431_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU34956.1}
TAIR10	AT2G11810.1	0	monogalactosyldiacylglycerol synthase type C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	43758589	43762192	-
GWHAAZE00000007	mRNA	43758589	43762192	-
GWHAAZE00000007	exon	43758589	43758762	-
GWHAAZE00000007	exon	43759028	43759102	-
GWHAAZE00000007	exon	43759202	43759264	-
GWHAAZE00000007	exon	43759368	43759592	-
GWHAAZE00000007	exon	43759702	43759843	-
GWHAAZE00000007	exon	43760099	43760260	-
GWHAAZE00000007	exon	43761023	43761195	-
GWHAAZE00000007	exon	43761971	43762192	-
GWHAAZE00000007	CDS	43761971	43762192	-
GWHAAZE00000007	CDS	43761023	43761195	-
GWHAAZE00000007	CDS	43760099	43760260	-
GWHAAZE00000007	CDS	43759702	43759843	-
GWHAAZE00000007	CDS	43759368	43759592	-
GWHAAZE00000007	CDS	43759202	43759264	-
GWHAAZE00000007	CDS	43759028	43759102	-
GWHAAZE00000007	CDS	43758589	43758762	-

Transcript Sequence
>GWHTAAZE024535 AAATCGATCAACTCGGTGTTTCAGAGAGTTGGGTTAGGGGCAAGCAGCAAGTACGAGGTTGAGGATGATAATGATGATGGAACAACCATGGAAATGGTGCAAATTGGGGCTGAGAGAACCAAAAATGTGCTTATTTTGATGAGTGATACAGGTGGTGGTCACCGAGCCTCGGCAGAGGCCATTCGGGACGCTTTTCAATTGGAATTTGGGGATGAGTACAAGATTATTTTGAAGGATGTTTGGAAGGAGAACACCGGGTGGCCAATGAACGACATGGAGGGACAATACAAGTTCATGGTTAAACATGTTCAGCTCTGGAAAGTTGCGTTTCATAGTACTTCGCCTCGATGGATACACTGCCTCTATCTTGCTGCCATTGCCGCATTCTATGCCAAGGAGGTTGAAGCCGGTCTAATGGAGTACAAGCCAGACATTATCATCAGCGTACATCCATTAATGCAACACATCCCTTTATGGGTTCTTAAATGGCAAGGCCTACATAAGAAAGTGATTTTTGTCACTGTCATTACAGACCTCAATACATGCCACCCCACATGGTTTCATCCTGGTGTTAATAGATGCTACTGCCCCTCGGAAGAAGTCGCAAAGAGGGCTTTGCTAGATGGCCTCAAAGAATTTCAAGTACGCGTCTTTGGCTTGCCTATCCGTCCATCATTTTGCCGCGCTATTCTCTCCAAGGACGAATCAAGAGTAGAGCTTGAAATGGATCTCACATTACCAGCAGTTTTGTTGATGGGCGGTGGTGAAGGGATGGGCCCCGTGAAGAAAACTGCAAAGGCTCTTGGAGAATCTCTGTTTGATCAAGAACTTGAGAAACCAATTGGTCAATTAATTATCATTTGTGGTCGCAATAAAGCACTGGCATCTACACTCGAATCGCTAAATTGGAAAATCCCTGTTAAGATTAGAGGGTTTGAAACACATATGGAGAAATGGATGGGTGCTTGTGACTGCATTATTACAAAAGCTGGACCTGGCACAATTGCAGAGGCATTGATCCGAGGGCTTCCAATTATTCTCAATGACTACATTCCTGGGCAAGAAAAGGGAAATGTACCATATGTAGTTGACAATGGGGCCGGTGTATTCACTCGAAGCCCAAAAGAAACGGCAAAACTAGTAGCCGAATGGTTCAGCACCAAAACGGACGAGCTCAAGAGGATGTCAGAAAATTCGCTCAAACTAGCACAACCCAATGCGGTTTTGACATCGTGA

Network for GWHGAAZE024501

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06925.12	MGDG_synth	54	222	6.60E-59
PF04101.17	Glyco_tran_28_C	251	376	6.30E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03715	MGD	Metabolic pathways	map01100
K03715	MGD	Glycerolipid metabolism	map00561

Gene Ontology

GO term	Ontology	Name
GO:0009247	biological_process	glycolipid biosynthetic process
GO:0016758	molecular_function	transferase activity, transferring hexosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.227
	SRR3591706	second leaf	3.896
	SRR3591707	mature leaf	1.107
	SRR3591708	Shoot apex	3.097
	SRR3591709	Stem	13.196
	SRR3591710	White floral bud	63.472
	SRR3591711	White flower	11.649
	SRR3591712	Green floral bud	15.732
	SRR3591713	Yellow flower	18.003
SRP173429	SRR8316895	Juvenile bud stage	2.907
	SRR8316896	Juvenile bud stage	4.957
	SRR8316897	Juvenile bud stage	1.172
	SRR8316894	Third green stage	1.710
	SRR8316900	Third green stage	10.199
	SRR8316901	Third green stage	8.914
	SRR8316898	Complete white stage	1.462
	SRR8316899	Complete white stage	6.879
	SRR8316903	Complete white stage	2.472
	SRR8316902	Silver flowering stage	2.874
	SRR8316904	Silver flowering stage	2.787
	SRR8316905	Silver flowering stage	1.844
	SRR8316906	Gold flowering stage	3.873
	SRR8316907	Gold flowering stage	5.154
	SRR8316908	Gold flowering stage	1.858
SRP132670	SRR6706286	Control	8.321
	SRR6706287	Light intensity 50%	10.185
	SRR6706288	Light intensity 20%	8.752
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.180
	CNS0095593	Slightly white alabastrum(diploid) 2	6.122
	CNS0095594	Slightly white alabastrum(diploid) 3	4.805
	CNS0095595	Whole white alabastrum(diploid) 2	10.064
	CNS0095596	Whole white alabastrum(diploid) 3	9.361
	CNS0095597	Whole white alabastrum(diploid) 4	16.019
	CNS0095598	Silvery flower (diploied) 1	3.910
	CNS0095599	Silvery flower (diploied) 2	7.118
	CNS0095600	Silvery flower (diploied) 3	5.012
	CNS0095601	Golden flower (diploid) 1	2.272
	CNS0095602	Golden flower (diploid) 2	3.661
	CNS0095603	Golden flower (diploid) 3	3.677
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.250
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.317
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.360
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.302
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.584
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.559
	CNS0095610	Silvery flower (tetraploid) 1	3.620
	CNS0095611	Silvery flower (tetraploid) 2	5.433
	CNS0095612	Silvery flower (tetraploid) 3	11.648
	CNS0095613	Golden flower (tetraploid) 1	1.398
	CNS0095614	Golden flower (tetraploid) 2	2.001
	CNS0095615	Golden flower (tetraploid) 3	7.241
CRA001975	CRR073297	Stem 1	7.120
	CRR073298	Stem 2	5.441
	CRR073299	Stem 3	5.197
	CRR073300	Leaf 1	8.136
	CRR073301	Leaf 2	8.037
	CRR073302	Leaf 3	5.300
	CRR073303	Juvenile bud 1	13.863
	CRR073304	Juvenile bud 2	15.646
	CRR073305	Juvenile bud 3	11.170
	CRR073306	Third green 1	16.622
	CRR073307	Third green 2	21.682
	CRR073308	Third green 3	18.740
	CRR073309	Second white 1	13.036
	CRR073310	Second white 2	6.233
	CRR073311	Second white 3	7.474
	CRR073312	Silver flowering 1	16.111
	CRR073313	Silver flowering 2	18.273
	CRR073314	Silver flowering 3	11.246
	CRR073315	Gold flowering 1	14.310
	CRR073316	Gold flowering 2	3.969
	CRR073317	Gold flowering 3	9.212
	CRR073318	Tawny withering 1	11.884
	CRR073319	Tawny withering 2	11.978
	CRR073320	Tawny withering 3	11.681