Gene detail

Detail information of GWHGAAZE024493

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009774296.1	0	PREDICTED: probable sucrose-phosphate synthase [Nicotiana sylvestris]
COG	YP_004511535.1	2E-134	sucrose-phosphate synthase
Swissprot	tr\|O22060\|SPSA1_CITUN	0	Probable sucrose-phosphate synthase 1
trEMBL	tr\|Q9SNY7\|Q9SNY7_TOBAC	0	Sucrose-phosphate synthase {ECO:0000313\|EMBL:AHZ89840.1}
TAIR10	AT5G20280.1	0	sucrose phosphate synthase 1F

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	43623708	43640335	-
GWHAAZE00000007	mRNA	43623708	43640335	-
GWHAAZE00000007	exon	43640153	43640335	-
GWHAAZE00000007	exon	43639868	43639957	-
GWHAAZE00000007	exon	43638433	43638674	-
GWHAAZE00000007	exon	43637961	43638024	-
GWHAAZE00000007	exon	43636764	43637459	-
GWHAAZE00000007	exon	43635771	43635887	-
GWHAAZE00000007	exon	43635454	43635585	-
GWHAAZE00000007	exon	43634461	43634637	-
GWHAAZE00000007	exon	43634153	43634206	-
GWHAAZE00000007	exon	43634005	43634067	-
GWHAAZE00000007	exon	43627025	43627957	-
GWHAAZE00000007	exon	43625512	43625639	-
GWHAAZE00000007	exon	43623708	43623981	-
GWHAAZE00000007	CDS	43640153	43640335	-
GWHAAZE00000007	CDS	43639868	43639957	-
GWHAAZE00000007	CDS	43638433	43638674	-
GWHAAZE00000007	CDS	43637961	43638024	-
GWHAAZE00000007	CDS	43636764	43637459	-
GWHAAZE00000007	CDS	43635771	43635887	-
GWHAAZE00000007	CDS	43635454	43635585	-
GWHAAZE00000007	CDS	43634461	43634637	-
GWHAAZE00000007	CDS	43634153	43634206	-
GWHAAZE00000007	CDS	43634005	43634067	-
GWHAAZE00000007	CDS	43627025	43627957	-
GWHAAZE00000007	CDS	43625512	43625639	-
GWHAAZE00000007	CDS	43623708	43623981	-

Transcript Sequence
>GWHTAAZE024527 ATGGCGGGAAACGATTGGATAAACAGTTACTTGGAGGCGATACTGGACGTAGGTCCAGGTCTTGACGATGCTAAATCCTCTCTGTTGTTGAGAGAGAGAGGCAGATTCAGTCCTACTCGATACTTCGTTGATAACGTTATCACTGGATTTGATGAGACCGATCTCCATCGCTCATGGATTAAAGCACAAGCGACGAGGAGTCCACAGGAGAGGAATACGCGGTTGGAGAATATGTGTTGGCGGATTTGGAATTTGGCTCGCCAGAAGAAGCAGCTTGAGGGGGAGCAAGCTCAGAGGATGGCTAAACGTCGTATGGAACGCGAACGAGGTCGCAAAGAAGCAGTTGCTGATATGTCGGAAGACTTGTCAGAGGGGGAGAAAGGAGATACAATTAGTGAAATTTCTGCTCACGGTGAAAGCCATAGAGGTCGATTGCCCAGAATTAGCTCTGTTGATGCGATGGACGCATGGGTTAGTCAACAAAAGGGGAAAAAGCTCTACATTGTATTAATAAGTCTTCATGGTCTGATACGAGGTGAAAATATGGAGCTCGGCCGTGATTCTGATACTGGTGGACAGGTAAAGTATGTTGTGGAACTTGCTAGGGCTTTAGGCTCAATGCCGGGTGTATATCGGGTCGATTTGCTGACCAGGCAAGTATCTTCTCCAGAAGTAGATTGGAGTTACGCTGAACCCACAGAGATGCTGCCTCCAAGAGATTCTGAAGGGTTAACCGAGATGGGGGAGAGTAGTGGTTCTTATATTATTCGTATTCCATTTGGTCCAAGAGATCAATACATACCCAAAGAACTACTTTGGCCCCACATCCCTGAATTTGTGGATGGTGCACTTAACCACATATTACAAATGTCCAAAGTTCTTGGTGAACAGATTGGTGGTGGTCATCCAGTTTGGCCCGTTGCTATCCATGGGCATTATGCTGATGCGGGTGACTCTGCTGCTCTCCTCTCTGGTGCTCTAAATGTACCCATGCTTTTCACTGGCCATTCACTTGGTCGAGACAAGTTGGAACAACTTTTGAGACAAGGCCGATTATCGAGGGAAGAAATAAATTCGACATACAAGATAATGCGAAGGATAGAGGCGGAGGAGTTAGCACTCGATGCTTCGGAAATAGTGATAACTAGCACTAGACAAGAGATTGAAGAGCAGTGGCGTTTGTATGATGGTTTCGATCCAATACTTGAACGTAAACTACGAGCTAGAATAAGGCGTAATGTCAGCTGTTATGGAAGGTTCATGCCTCGCATGGTTGTAATCCCCCCTGGGATGGAGTTCCATCACATTGTTCCACAGGATGGTGATATGGAGGGCGAAACAGAAGGAAATGAAGATCATCCTACTTCCCCAGATCCACCTATTTGGACAGAGATAATGCGCTTCTTTACAAATCCGCGTAAGCCTATGATTCTTGCTCTTGCAAGGCCAGATCCAAAAAAGAACCTCACAACTTTGGTCAAAGCATTTGGGGAATGTCGTCCGCTAAGAGAGCTTGCTAATCTTACGCTGATAATGGGTAATAGAGATAATGTGGACGAAATGTCAAGCACCAGTTCTTCTGTTCTTCTGTCAATTCTCAAGCTAATTGATAAGTATGATCTCTATGGTCAAGTGGCATACCCCAAACATCACAAGCAGTCTGATGTTCGTGACATTTACCGTCTAGCAGCGAAAACAAAGGGTGTTTTCATTAATCCAGCATTCATTGAGCCATTTGGGCTTACTCTGATTGAGGCAGCGGCTCATGGTTTACCTATGGTTGCCACAAAAAATGGAGGTCCTGTTGACATACATCGGGTACTTGACAATGGTCTCCTTGTGGATCCCCATGATCAGCAGTCCATCGCTGATGCCCTTCTGAAGCTGGTTGCTGATAAGCAACTTTGGGCAAAATGCCGACAAAATGGGTTGAAAAATATCCACCTTTTCTCCTGGCCAGAACACTGCAAGACTTACCTATCTAAAATCGCGAGCTGCAAGCCTAGGCAGCCCCGGTGGCTAAGAAGTGATAGCGACGACGAACAATTCGAATCAGAGTCACCAAGCGATTCCTTAAGAGATATACAAGATATATCTTTGAACTTGAAGTTCTCATTAGATGGAGAAAAGAATGACATTAAAGGAATTGGTAATTCTTTTGATCCAGAAGATCGAAAGAGCAGATTAGAGAATGCTGTTTTAACATGGTCAAAGGGTGTCCAAAAGGGCACGCAAAAATCCGGGATCACCGAGAAACCGGACCAAAATCCTGGTAGTGGCAAGTTCCCAGCATTGAGGAGGAGGAAACATATTTTTGTAATGGCAGTGGATGGTGATGAGATTTCAGGTCTTTTCGAAAGCATTAGGAAGGTATTCGAAGCTGTAGAGAAAGAAAGAACTGAAGGGTCAATAGGGTTCATATTGGCCACATCTTTTACCATGTCTGAAGTACGTTCTTTCTTGGATGAAGAGGGAGTGAACCCTACTGATTTTGATGCTTTTATTTGCAATAGTGGTGGTGATCTCTACTATTCGTCTATTCATTCAGAAGATAATCCCTTTGTAGTTGATTTATATTATCATTCACACATTGAATACCGCTGGGGTGGTGAAGGGTTGAGGAAGACTTTGGTTCGGTGGACCTCTTCTATTTTTGACAAGAACTCTGAAAATGCGAAGTATGTCATTACGGAAGATGAAAAGATCTCAACGGACTACTGCTATGCTTTTAAAGTTACCAAGCCTGGAATTGTTCCCCCTGTTAAAGAACTTCGGAAGTTAATGAGAATTCAAGCTCTCCGTTGTCATGTTATTTATTGTCAAAATGGGAGGAAGATTAATGTGATTCCAGTACTAGCCTCTCGTTCCCAAGCACTTCGGTATTTATATCTCCGGTGGGGCATGGACTTGTCGAATGTGGTGGTTTTCGTCGGAGAAAGCGGGGACACAGATTACGAGGGGCTCCTTGGTGGCTTGAACAAGTCTGTAGTACTCAAGGGAGTTTGCAGTAACTCCACCAATCATCTTCACGCTAACCGGAACTACCCACTTACTGACGTAGTTCCATTCGACAGCCCCAAAATCGTTCAAACACCCGCAGAATGCACCACTTCTGATCTTCGCTCTTCATTGGAGAAACTTGGAGTTCTCTAA

Network for GWHGAAZE024493

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00862.20	Sucrose_synth	167	389	5.60E-09
PF00534.21	Glycos_transf_1	470	644	2.10E-24
PF05116.14	S6PP	773	999	8.50E-13

Protein Sequence

>GWHPAAZE024511
MAGNDWINSYLEAILDVGPGLDDAKSSLLLRERGRFSPTRYFVDNVITGFDETDLHRSWIKAQATRSPQERNTRLENMCWRIWNLARQKKQLEGEQAQRMAKRRMERERGRKEAVADMSEDLSEGEKGDTISEISAHGESHRGRLPRISSVDAMDAWVSQQKGKKLYIVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPEVDWSYAEPTEMLPPRDSEGLTEMGESSGSYIIRIPFGPRDQYIPKELLWPHIPEFVDGALNHILQMSKVLGEQIGGGHPVWPVAIHGHYADAGDSAALLSGALNVPMLFTGHSLGRDKLEQLLRQGRLSREEINSTYKIMRRIEAEELALDASEIVITSTRQEIEEQWRLYDGFDPILERKLRARIRRNVSCYGRFMPRMVVIPPGMEFHHIVPQDGDMEGETEGNEDHPTSPDPPIWTEIMRFFTNPRKPMILALARPDPKKNLTTLVKAFGECRPLRELANLTLIMGNRDNVDEMSSTSSSVLLSILKLIDKYDLYGQVAYPKHHKQSDVRDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVADKQLWAKCRQNGLKNIHLFSWPEHCKTYLSKIASCKPRQPRWLRSDSDDEQFESESPSDSLRDIQDISLNLKFSLDGEKNDIKGIGNSFDPEDRKSRLENAVLTWSKGVQKGTQKSGITEKPDQNPGSGKFPALRRRKHIFVMAVDGDEISGLFESIRKVFEAVEKERTEGSIGFILATSFTMSEVRSFLDEEGVNPTDFDAFICNSGGDLYYSSIHSEDNPFVVDLYYHSHIEYRWGGEGLRKTLVRWTSSIFDKNSENAKYVITEDEKISTDYCYAFKVTKPGIVPPVKELRKLMRIQALRCHVIYCQNGRKINVIPVLASRSQALRYLYLRWGMDLSNVVVFVGESGDTDYEGLLGGLNKSVVLKGVCSNSTNHLHANRNYPLTDVVPFDSPKIVQTPAECTTSDLRSSLEKLGVL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00696	E2.4.1.14	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005985	biological_process	sucrose metabolic process
GO:0046524	molecular_function	sucrose-phosphate synthase activity
GO:0016157	molecular_function	sucrose synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.975
	SRR3591706	second leaf	21.474
	SRR3591707	mature leaf	28.886
	SRR3591708	Shoot apex	18.419
	SRR3591709	Stem	33.901
	SRR3591710	White floral bud	199.508
	SRR3591711	White flower	66.818
	SRR3591712	Green floral bud	35.335
	SRR3591713	Yellow flower	33.306
SRP173429	SRR8316895	Juvenile bud stage	14.987
	SRR8316896	Juvenile bud stage	19.038
	SRR8316897	Juvenile bud stage	10.930
	SRR8316894	Third green stage	12.932
	SRR8316900	Third green stage	41.174
	SRR8316901	Third green stage	36.418
	SRR8316898	Complete white stage	104.709
	SRR8316899	Complete white stage	76.722
	SRR8316903	Complete white stage	196.589
	SRR8316902	Silver flowering stage	40.400
	SRR8316904	Silver flowering stage	68.885
	SRR8316905	Silver flowering stage	20.361
	SRR8316906	Gold flowering stage	37.211
	SRR8316907	Gold flowering stage	49.091
	SRR8316908	Gold flowering stage	41.702
SRP132670	SRR6706286	Control	51.218
	SRR6706287	Light intensity 50%	54.112
	SRR6706288	Light intensity 20%	47.621
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.515
	CNS0095593	Slightly white alabastrum(diploid) 2	14.595
	CNS0095594	Slightly white alabastrum(diploid) 3	12.825
	CNS0095595	Whole white alabastrum(diploid) 2	15.218
	CNS0095596	Whole white alabastrum(diploid) 3	13.428
	CNS0095597	Whole white alabastrum(diploid) 4	16.030
	CNS0095598	Silvery flower (diploied) 1	25.993
	CNS0095599	Silvery flower (diploied) 2	28.153
	CNS0095600	Silvery flower (diploied) 3	109.962
	CNS0095601	Golden flower (diploid) 1	18.879
	CNS0095602	Golden flower (diploid) 2	52.878
	CNS0095603	Golden flower (diploid) 3	50.138
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.992
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.566
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.186
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.087
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.776
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.777
	CNS0095610	Silvery flower (tetraploid) 1	126.158
	CNS0095611	Silvery flower (tetraploid) 2	79.713
	CNS0095612	Silvery flower (tetraploid) 3	122.916
	CNS0095613	Golden flower (tetraploid) 1	36.381
	CNS0095614	Golden flower (tetraploid) 2	76.500
	CNS0095615	Golden flower (tetraploid) 3	57.442
CRA001975	CRR073297	Stem 1	24.446
	CRR073298	Stem 2	24.083
	CRR073299	Stem 3	23.717
	CRR073300	Leaf 1	35.453
	CRR073301	Leaf 2	28.987
	CRR073302	Leaf 3	27.674
	CRR073303	Juvenile bud 1	36.036
	CRR073304	Juvenile bud 2	34.090
	CRR073305	Juvenile bud 3	58.647
	CRR073306	Third green 1	50.257
	CRR073307	Third green 2	43.452
	CRR073308	Third green 3	66.405
	CRR073309	Second white 1	59.535
	CRR073310	Second white 2	50.513
	CRR073311	Second white 3	49.753
	CRR073312	Silver flowering 1	32.777
	CRR073313	Silver flowering 2	25.541
	CRR073314	Silver flowering 3	32.302
	CRR073315	Gold flowering 1	21.819
	CRR073316	Gold flowering 2	38.790
	CRR073317	Gold flowering 3	37.847
	CRR073318	Tawny withering 1	20.036
	CRR073319	Tawny withering 2	18.022
	CRR073320	Tawny withering 3	15.124