Gene detail

Detail information of GWHGAAZE024459

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007202128.1	0	hypothetical protein PRUPE_ppa006069mg [Prunus persica]
COG	YP_008151634.1	5E-22	hypothetical protein SCE1572_26190
Swissprot	tr\|Q9SRH7\|Y3130_ARATH	6E-150	Receptor-like serine/threonine-protein kinase At3g01300
trEMBL	tr\|M5VPV1\|M5VPV1_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ03327.1}
TAIR10	AT5G15080.1	5E-122	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	42847295	42851051	-
GWHAAZE00000007	mRNA	42847295	42851051	-
GWHAAZE00000007	exon	42847295	42847755	-
GWHAAZE00000007	exon	42848392	42848515	-
GWHAAZE00000007	exon	42848603	42848736	-
GWHAAZE00000007	exon	42849163	42849223	-
GWHAAZE00000007	exon	42849338	42849669	-
GWHAAZE00000007	exon	42850925	42851051	-
GWHAAZE00000007	CDS	42850925	42851051	-
GWHAAZE00000007	CDS	42849338	42849669	-
GWHAAZE00000007	CDS	42849163	42849223	-
GWHAAZE00000007	CDS	42848603	42848736	-
GWHAAZE00000007	CDS	42848392	42848515	-
GWHAAZE00000007	CDS	42847295	42847755	-

Transcript Sequence
>GWHTAAZE024493 ATGGAGAACAAGAAGTGTGGGTGCTGGTCTGTTCTCAGCCGAAGTTTTAAAGGCTCCTCCTGCAAATCCTCTGATTCCACTACTTCACCCAACACTATCCCAAGAACCAGCCTTGTTTATGATGCTGCTACAGAGACGAGATACTTGAACGCCAGCAACAGGGAAATGTGTGCTCCTAATGAAGCCCAAAATTCTTCCGACAATCCCACCTCCGAATTTTTACCACCACCACCACAAAAACAAATTCAACGCCAGCTTCTTCAGTTCACTTTCCAAGAACTAAAATCCGCCACTGGGAACTTCAGACCAGATAGTATTCTTGGGGAGGGTGGATTTGGCTATGTTTTCAAAGGGTGGATAGAGGAAAACGGCACAGCACCGGCTAAGCCAGGGTCTGGGATTACCGTTGCGGTCAAGAGTTTGAAACCAGACGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAGGTTGACTTTTTGGGACAGCTTCATCATCCTAATCTTGTTAAGCTAATCGGATACTGGAACATACCACTTCCATGGTCCAACAGGATTAAGATTGCACTTGGTGCAGCAAAAGGCTTAGCCTTTCTCCATGGAGGCACTGAACCAGTCATTTACAGAGACTTCAAGACATCAAATATTTTGCTTGATTCGGAATATAATGCAAAGCTTTCAGACTTTGGTCTAGCGAAAGCTGGGCCTCAAGGTGACAAAACTCATGTTTCTACAAGGGTCGTTGGAACATATGGCTATGCTGCTCCTGAATATGTGATGACAGGACATTTAACTTCTAAGAGTGATGTTTATAGCTTTGGTGTTGTCCTCTTGGAGATTTTAACCGGTAGGCGGTCCATGGACAAGAAACGCCCTAGTAGAGAACAAAATCTTGTGGCATGGGCTAGGCCATGTTTGGCAGATAAGCGAAAAGTTTATCAACTAGTCGATCCTCGGTTGGAATTGAATTACTCACTAAAAGGGGTACAAAAAGTTTCTCAACTAGCTTGCAATTGCCTAAACCGGGACCCGAAATCCCGCCCTTCAATGGATGAAGTTGTTAAGATTCTCACTCCATTGCAAGATCTCAATGATCTGGCGATTCTGTCTTATCACACGCGTTCATCTCAACAAGGGAGGCGCAAGAAGAAACCCGAAGGAGCTCATCAAATGCAACTTACGTATAACCAATCCAAGAGCATTAGAAACTCACCAATGAATTCGGGCAAACAGCATTGTATATAG

Network for GWHGAAZE024459

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	105	173	2.50E-08
PF00069.26	Pkinase	185	353	2.70E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.065
	SRR3591706	second leaf	9.262
	SRR3591707	mature leaf	9.410
	SRR3591708	Shoot apex	14.667
	SRR3591709	Stem	27.818
	SRR3591710	White floral bud	6.875
	SRR3591711	White flower	6.962
	SRR3591712	Green floral bud	6.517
	SRR3591713	Yellow flower	5.234
SRP173429	SRR8316895	Juvenile bud stage	2.442
	SRR8316896	Juvenile bud stage	3.148
	SRR8316897	Juvenile bud stage	0.684
	SRR8316894	Third green stage	1.899
	SRR8316900	Third green stage	5.411
	SRR8316901	Third green stage	4.404
	SRR8316898	Complete white stage	2.504
	SRR8316899	Complete white stage	13.831
	SRR8316903	Complete white stage	4.216
	SRR8316902	Silver flowering stage	3.474
	SRR8316904	Silver flowering stage	5.088
	SRR8316905	Silver flowering stage	1.692
	SRR8316906	Gold flowering stage	8.326
	SRR8316907	Gold flowering stage	9.210
	SRR8316908	Gold flowering stage	5.010
SRP132670	SRR6706286	Control	3.785
	SRR6706287	Light intensity 50%	3.613
	SRR6706288	Light intensity 20%	3.673
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.334
	CNS0095593	Slightly white alabastrum(diploid) 2	3.364
	CNS0095594	Slightly white alabastrum(diploid) 3	1.771
	CNS0095595	Whole white alabastrum(diploid) 2	2.380
	CNS0095596	Whole white alabastrum(diploid) 3	2.344
	CNS0095597	Whole white alabastrum(diploid) 4	2.642
	CNS0095598	Silvery flower (diploied) 1	3.599
	CNS0095599	Silvery flower (diploied) 2	2.997
	CNS0095600	Silvery flower (diploied) 3	3.982
	CNS0095601	Golden flower (diploid) 1	1.836
	CNS0095602	Golden flower (diploid) 2	4.857
	CNS0095603	Golden flower (diploid) 3	4.506
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.320
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.014
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.019
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.836
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.533
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.926
	CNS0095610	Silvery flower (tetraploid) 1	1.798
	CNS0095611	Silvery flower (tetraploid) 2	1.815
	CNS0095612	Silvery flower (tetraploid) 3	2.683
	CNS0095613	Golden flower (tetraploid) 1	0.348
	CNS0095614	Golden flower (tetraploid) 2	0.935
	CNS0095615	Golden flower (tetraploid) 3	1.576
CRA001975	CRR073297	Stem 1	5.851
	CRR073298	Stem 2	4.986
	CRR073299	Stem 3	9.646
	CRR073300	Leaf 1	8.919
	CRR073301	Leaf 2	5.954
	CRR073302	Leaf 3	8.198
	CRR073303	Juvenile bud 1	10.087
	CRR073304	Juvenile bud 2	5.920
	CRR073305	Juvenile bud 3	17.712
	CRR073306	Third green 1	5.048
	CRR073307	Third green 2	10.280
	CRR073308	Third green 3	8.846
	CRR073309	Second white 1	3.968
	CRR073310	Second white 2	3.907
	CRR073311	Second white 3	2.963
	CRR073312	Silver flowering 1	2.861
	CRR073313	Silver flowering 2	4.292
	CRR073314	Silver flowering 3	5.407
	CRR073315	Gold flowering 1	5.173
	CRR073316	Gold flowering 2	4.993
	CRR073317	Gold flowering 3	5.360
	CRR073318	Tawny withering 1	35.522
	CRR073319	Tawny withering 2	42.934
	CRR073320	Tawny withering 3	45.855