Gene detail

Detail information of GWHGAAZE024361

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276468.1	0	PREDICTED: alpha-mannosidase 2x [Vitis vinifera]
COG	YP_003986012.1	4E-10	alpha-mannosidase
Swissprot	tr\|C0HJB3\|MANA_CANEN	1E-89	Alpha-mannosidase, light subunit {ECO:0000303\|PubMed:24221485}
trEMBL	tr\|F6HV68\|F6HV68_VITVI	0	Alpha-mannosidase {ECO:0000256\|RuleBase:RU361199}
TAIR10	AT5G14950.1	0	golgi alpha-mannosidase II

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40691595	40708123	+
GWHAAZE00000007	mRNA	40691595	40708123	+
GWHAAZE00000007	exon	40691595	40691648	+
GWHAAZE00000007	exon	40697594	40697875	+
GWHAAZE00000007	exon	40704051	40704200	+
GWHAAZE00000007	exon	40704838	40704870	+
GWHAAZE00000007	exon	40705385	40708123	+
GWHAAZE00000007	CDS	40691595	40691648	+
GWHAAZE00000007	CDS	40697594	40697875	+
GWHAAZE00000007	CDS	40704051	40704200	+
GWHAAZE00000007	CDS	40704838	40704870	+
GWHAAZE00000007	CDS	40705385	40708123	+

Transcript Sequence
>GWHTAAZE024395 ATGAAGCGTAGTGGATTCTCGTGCTCGTTCTTGAGTGATTCAATGGATTTGAAGCCAATTTACCGCAAGCCTCAGAGCAACGTCCTTTCCGGTGCCGTCGTTGATTTAACGACCAAGGATTTGTATGATAAGATCCAGTTTAGTGACGTTGATGGTGGACCCTGGAAGCAAGGGTGGAGAGTTGGTTACAAAGGTGATGAGTGGGATTCCGAGAGATTGAAGGTGTTCGTGGTTCCGCATTCGCATAATGATCCTGGTTGGAAACTTACTGTGGAGGAGTATTACGAGAGGCAATCGAGGAATATTCTCGATACTATTGTTGAGACTCTAGCGAAGGATGAGCGACGCAAGTTTATATGGGAAGAGATGTCTTATCTGGAGAGATGGTGGAGGGATTCTTCTGATTCAAAAAGGGAATCCTTCATCAGTTTAGTCCAAAATGGACAGTTAGAAATTGTTGGAGGTGGTTGGGTGATGAATGACGAGGCCAATTCACATTATTTTGCAATCATCGAGCAGATGATAGAGGGAAATATGTGGTTAAATGAGACGATAGGGGTCATTCCGAAAAATTCTTGGGCAATAGATCCTTTTGGCTATTCATCAACAATGGCATATCTTCTTCGTCGAATGGGTTTCGAAAACATGCTTATACAGAGGACCCACTATGAATTGAAGAAGGAACTCGCTTTGCACAAAAATTTAGAATACATATGGCGGCAAAGCTGGGATACCGAGGAAACAACCGACATTTTTGTCCACATGATGCCCTTTTACTCTTACGATGTCCCACATACTTGTGGGCCCGAGCCTGCAGTCTGTTGCCAGTTCGACTTTGCCCGAATGCGCGGTTTTTTTTACGAACTCTGCCCTTGGGGAGATCATCCTCAAGAAACTAACCAAGAAAATGTGAAGGAAAGAGCGCTTACACTACTCGATCAATACAAGAAGAAATCAACACTATACCGAACAAATACGCTTCTTGTTCCCCTCGGTGATGATTTTCGATACGTGAGCACTGACGAAGCTGAAGCCCAGTTTAGGAATTACCAACTTTTATTCGATTATATTAATTCCAATCCCGGACTGAATGCTGAAGCAAAGTTTGGTACTTTGGAAGATTACTTCAAAACCTTACGGGAAGAGGCGGACCGAATAAATTATTCGCTTCCTGGGGAGGTGGGCTCTGGTCAAGTTGGCGGTTTCCCTTCTTTATCAGGTGATTTCTTTACTTATGCTGATAGGCAACAAGATTATTGGAGCGGGTATTACGTATCAAGGCCCTTTTTTAAGGCAGTTGACCGTGTTCTTGAGCAAACACTTCGAGCCACTGAAATAATGATTTCTTTTCTTCTTGGGTACTGCCAAAGAGCACAATGTGAAAAATTGCCAACGGGTTTTTCATACAAGTTGACGGCTGCGAGAAGGAACTTAGCCCTCTTTCAACACCATGACGGTGTAACCGGAACTGCAAAGGATCATGTGGTTGAGGACTATGGGATTCGCATGTACACTTCTTTAATGGACTTGCAAATCTTTATGTCTAAAGCTATCGAGGTACTTCTTGGGATCCGCCATGAGAGAACGGATCAAATCCCGGCTATGTTTGAACCGGCTCAAGTGAGATCAAAGTATGACGCCCAACCAGTGCACCGAGCAATTAGTGCCCTTGAAGGAACCGTTCAATCGGTGGTGCTTTTCAATCCACTTGAGCAAACAAGAAATGAGGTTGTGATGGTTATTGTTGAACGGTCCGATGTGACCATTCTTGATTCGAACTGGACGTGTGTTAAAAGCCAAATTTCTCCCGAATTGCAGCATGATAGAAGGAATCTGTTTACGGGTCGGCATCGGGTTCACTGGAAAGCTTCGGTTCCAGCTATGGGTTTGCAAACGTATTACATCGCTAACGGGTTTGTTGGATGTGAAAAAGCCAAACCCGCAAAGCTCAAAATTTTCTCAGGATCCAAACAGCTACCTTGCCTTGCTCCATACACTTGCTCAAAAACTGGAAATGGTGTCATTGAAATCGGGAATCGGCATTTGACCCTTACCTTCGATGCCAAGCTCGGTTTATTGCAAAAAGTAAGCCGTAATGATGGGACCCACAATGTTGTTGGTGAAGAGATTGCTATGTACTCTAGCTCGGAAAGTGGGGCCTACTTGTTCAAACCCATCGGGGACGCTAAGCCGATCGGTCAAGCCGGTGCTCAAATGGTGGTTTCTGAGGGTTTGCTGATGCAGGAAGTTTTCTCGTATCCCAAGACAGATTGGGTTAAATCTCCGATCTCCCATAGTACGCGGATATATAATGGTGATAATACTATACAAGAATTTTTCATTGAGAAAGAATATCATGTTGAGCTTCTGGGTTCAGATTTTAATGACAGAGAATTGATAGTTAGATACAAAACAGATATTGATAACAAGAGGATTTTCTATTCTGATTTAAATGGGTTCCAAATGAGCAGGAGAGAAACTTACGATAAGATCCCTCTTCAAGGGAATTACTACCCGATGCCGTCTCTCGCGTTTATCCAGGGGTCCAATGGTCAGCGTTTCTCCGTCCATACCCGGCAGTCATTGGGTGCAGCGACCCTTAAAGATGGATGCTTAGAGATCATGCTGGACCGGCGATTAGTGAGAGATGATGGACGCGGTCTCGGTCAAGGAGTAATGGATAACCGTCCAATGAATGTACTTTTCCACATCCTGATCGAATCCAACATTTCTTACACTTCGAGCCCGTCTTCAAACCCGTATCCGATGAGCCCCTCTCTCCTCTCTCACCTCGTTGGGGCCCACTTGAACTACCCGTTACACGCATTCCTAGCTAAGGACCCACAAGAAATATCAGTCCAACCTCCTCCAAGAAGCTTCTCTCCTTTATCAGCTCCGTTGCCGTGTGATTTGCATGTTGTGAACTTTAAGGTTCCTCGGCCTTTGAAATATTCTCAGCAGATTCTTGAAGATCCTCGGTTTGTTCTAATCTTGCAGAGACGGCAATGGGATTCCTCGTATTGTCGGAAGGGTCGGTCCGATTGTTCTAGAGTGGCGAACGAGACTGTTAATTTGTTCAATTTGTTTAAGGAGCTTGCGGTTTTGAATGTGAAAGCTACTTCATTGAACCTTTTGCATGAAGATTCGGAGTTGCTTGGATATGGCGAACAATCTGGAGAAGATGCTCAAGAAGGACATGTTCTTCTATCTCCCATGGAAATTCAGGCTTACAAGTTGGATTTGCGACCCAACCAATGA

Network for GWHGAAZE024361

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01074.23	Glyco_hydro_38N	74	413	2.40E-103
PF09261.12	Alpha-mann_mid	419	521	3.40E-21
PF07748.14	Glyco_hydro_38C	677	886	6.50E-35

Protein Sequence

>GWHPAAZE024379
MKRSGFSCSFLSDSMDLKPIYRKPQSNVLSGAVVDLTTKDLYDKIQFSDVDGGPWKQGWRVGYKGDEWDSERLKVFVVPHSHNDPGWKLTVEEYYERQSRNILDTIVETLAKDERRKFIWEEMSYLERWWRDSSDSKRESFISLVQNGQLEIVGGGWVMNDEANSHYFAIIEQMIEGNMWLNETIGVIPKNSWAIDPFGYSSTMAYLLRRMGFENMLIQRTHYELKKELALHKNLEYIWRQSWDTEETTDIFVHMMPFYSYDVPHTCGPEPAVCCQFDFARMRGFFYELCPWGDHPQETNQENVKERALTLLDQYKKKSTLYRTNTLLVPLGDDFRYVSTDEAEAQFRNYQLLFDYINSNPGLNAEAKFGTLEDYFKTLREEADRINYSLPGEVGSGQVGGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRATEIMISFLLGYCQRAQCEKLPTGFSYKLTAARRNLALFQHHDGVTGTAKDHVVEDYGIRMYTSLMDLQIFMSKAIEVLLGIRHERTDQIPAMFEPAQVRSKYDAQPVHRAISALEGTVQSVVLFNPLEQTRNEVVMVIVERSDVTILDSNWTCVKSQISPELQHDRRNLFTGRHRVHWKASVPAMGLQTYYIANGFVGCEKAKPAKLKIFSGSKQLPCLAPYTCSKTGNGVIEIGNRHLTLTFDAKLGLLQKVSRNDGTHNVVGEEIAMYSSSESGAYLFKPIGDAKPIGQAGAQMVVSEGLLMQEVFSYPKTDWVKSPISHSTRIYNGDNTIQEFFIEKEYHVELLGSDFNDRELIVRYKTDIDNKRIFYSDLNGFQMSRRETYDKIPLQGNYYPMPSLAFIQGSNGQRFSVHTRQSLGAATLKDGCLEIMLDRRLVRDDGRGLGQGVMDNRPMNVLFHILIESNISYTSSPSSNPYPMSPSLLSHLVGAHLNYPLHAFLAKDPQEISVQPPPRSFSPLSAPLPCDLHVVNFKVPRPLKYSQQILEDPRFVLILQRRQWDSSYCRKGRSDCSRVANETVNLFNLFKELAVLNVKATSLNLLHEDSELLGYGEQSGEDAQEGHVLLSPMEIQAYKLDLRPNQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01231	MAN2	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0006013	biological_process	mannose metabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004559	molecular_function	alpha-mannosidase activity
GO:0003824	molecular_function	catalytic activity
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.849
	SRR3591706	second leaf	11.792
	SRR3591707	mature leaf	13.782
	SRR3591708	Shoot apex	13.579
	SRR3591709	Stem	24.340
	SRR3591710	White floral bud	18.578
	SRR3591711	White flower	21.568
	SRR3591712	Green floral bud	26.419
	SRR3591713	Yellow flower	18.565
SRP173429	SRR8316895	Juvenile bud stage	11.780
	SRR8316896	Juvenile bud stage	15.461
	SRR8316897	Juvenile bud stage	6.867
	SRR8316894	Third green stage	7.493
	SRR8316900	Third green stage	19.260
	SRR8316901	Third green stage	17.568
	SRR8316898	Complete white stage	5.037
	SRR8316899	Complete white stage	22.912
	SRR8316903	Complete white stage	13.090
	SRR8316902	Silver flowering stage	6.008
	SRR8316904	Silver flowering stage	11.216
	SRR8316905	Silver flowering stage	4.050
	SRR8316906	Gold flowering stage	13.461
	SRR8316907	Gold flowering stage	11.700
	SRR8316908	Gold flowering stage	16.559
SRP132670	SRR6706286	Control	17.444
	SRR6706287	Light intensity 50%	17.807
	SRR6706288	Light intensity 20%	20.292
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.187
	CNS0095593	Slightly white alabastrum(diploid) 2	10.455
	CNS0095594	Slightly white alabastrum(diploid) 3	9.898
	CNS0095595	Whole white alabastrum(diploid) 2	12.584
	CNS0095596	Whole white alabastrum(diploid) 3	11.824
	CNS0095597	Whole white alabastrum(diploid) 4	10.218
	CNS0095598	Silvery flower (diploied) 1	12.590
	CNS0095599	Silvery flower (diploied) 2	12.213
	CNS0095600	Silvery flower (diploied) 3	29.011
	CNS0095601	Golden flower (diploid) 1	11.242
	CNS0095602	Golden flower (diploid) 2	33.446
	CNS0095603	Golden flower (diploid) 3	31.217
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.231
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.402
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.840
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.209
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.380
	CNS0095610	Silvery flower (tetraploid) 1	23.050
	CNS0095611	Silvery flower (tetraploid) 2	25.241
	CNS0095612	Silvery flower (tetraploid) 3	20.373
	CNS0095613	Golden flower (tetraploid) 1	9.258
	CNS0095614	Golden flower (tetraploid) 2	20.664
	CNS0095615	Golden flower (tetraploid) 3	26.746
CRA001975	CRR073297	Stem 1	22.551
	CRR073298	Stem 2	20.769
	CRR073299	Stem 3	19.579
	CRR073300	Leaf 1	23.943
	CRR073301	Leaf 2	20.853
	CRR073302	Leaf 3	18.063
	CRR073303	Juvenile bud 1	20.559
	CRR073304	Juvenile bud 2	14.018
	CRR073305	Juvenile bud 3	26.280
	CRR073306	Third green 1	4.981
	CRR073307	Third green 2	5.063
	CRR073308	Third green 3	6.853
	CRR073309	Second white 1	7.012
	CRR073310	Second white 2	7.694
	CRR073311	Second white 3	8.769
	CRR073312	Silver flowering 1	10.165
	CRR073313	Silver flowering 2	9.694
	CRR073314	Silver flowering 3	9.344
	CRR073315	Gold flowering 1	12.806
	CRR073316	Gold flowering 2	22.940
	CRR073317	Gold flowering 3	13.183
	CRR073318	Tawny withering 1	25.152
	CRR073319	Tawny withering 2	16.578
	CRR073320	Tawny withering 3	23.449