Detail information of GWHGAAZE024325


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAB69766.13.00864E-65putative pectate lyase Nt59 [Nicotiana tabacum]
Swissprottr|P15722|PLY59_SOLLC6E-59Probable pectate lyase P59 (Precursor)
trEMBLtr|O24161|O24161_TOBAC1E-65Pectate lyase {ECO:0000256|RuleBase:RU361123} (Fragment)
TAIR10AT2G02720.15E-38Pectate lyase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4009711740097907-
GWHAAZE00000007mRNA4009711740097907-
GWHAAZE00000007exon4009711740097350-
GWHAAZE00000007exon4009776140097907-
GWHAAZE00000007CDS4009776140097907-
GWHAAZE00000007CDS4009711740097350-
Transcript Sequence

Network for GWHGAAZE024325

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.788
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem2.316
SRR3591710White floral bud373.089
SRR3591711White flower19.213
SRR3591712Green floral bud273.456
SRR3591713Yellow flower14.276
SRP173429 SRR8316895Juvenile bud stage 6.764
SRR8316896Juvenile bud stage 23.799
SRR8316897Juvenile bud stage 15.896
SRR8316894Third green stage 15.093
SRR8316900Third green stage 168.713
SRR8316901Third green stage 149.014
SRR8316898Complete white stage 0.101
SRR8316899Complete white stage 1.087
SRR8316903Complete white stage 0.799
SRR8316902Silver flowering stage3.579
SRR8316904Silver flowering stage7.585
SRR8316905Silver flowering stage2.593
SRR8316906Gold flowering stage 1.181
SRR8316907Gold flowering stage 0.123
SRR8316908Gold flowering stage 0.545
SRP132670SRR6706286Control137.579
SRR6706287Light intensity 50%136.319
SRR6706288Light intensity 20%114.673
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1148.851
CNS0095593Slightly white alabastrum(diploid) 2119.495
CNS0095594Slightly white alabastrum(diploid) 3153.869
CNS0095595Whole white alabastrum(diploid) 2425.235
CNS0095596Whole white alabastrum(diploid) 3509.964
CNS0095597Whole white alabastrum(diploid) 4624.003
CNS0095598Silvery flower (diploied) 116.208
CNS0095599Silvery flower (diploied) 263.337
CNS0095600Silvery flower (diploied) 313.165
CNS0095601Golden flower (diploid) 120.006
CNS0095602Golden flower (diploid) 210.756
CNS0095603Golden flower (diploid) 311.182
CNS0095604Slightly white alabastrum(tetraploid) 1169.556
CNS0095605Slightly white alabastrum(tetraploid) 2189.427
CNS0095606Slightly white alabastrum(tetraploid) 30.307
CNS0095607Whole white alabastrum(tetraploid) 1532.982
CNS0095608Whole white alabastrum(tetraploid) 2713.553
CNS0095609Whole white alabastrum(tetraploid) 3245.102
CNS0095610Silvery flower (tetraploid) 19.764
CNS0095611Silvery flower (tetraploid) 241.291
CNS0095612Silvery flower (tetraploid) 381.704
CNS0095613Golden flower (tetraploid) 123.909
CNS0095614Golden flower (tetraploid) 25.189
CNS0095615Golden flower (tetraploid) 349.004
CRA001975CRR073297Stem 116.584
CRR073298Stem 216.958
CRR073299Stem 36.716
CRR073300Leaf 1151.457
CRR073301Leaf 277.034
CRR073302Leaf 341.960
CRR073303Juvenile bud 1121.436
CRR073304Juvenile bud 276.184
CRR073305Juvenile bud 313.296
CRR073306Third green 162.411
CRR073307Third green 281.885
CRR073308Third green 372.242
CRR073309Second white 11.449
CRR073310Second white 218.019
CRR073311Second white 316.162
CRR073312Silver flowering 163.355
CRR073313Silver flowering 262.101
CRR073314Silver flowering 339.004
CRR073315Gold flowering 168.896
CRR073316Gold flowering 217.827
CRR073317Gold flowering 311.403
CRR073318Tawny withering 181.449
CRR073319Tawny withering 261.927
CRR073320Tawny withering 354.052