Gene detail

Detail information of GWHGAAZE024290

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011010603.1	9.8979E-172	PREDICTED: protein FEZ-like isoform X2 [Populus euphratica]
Swissprot	tr\|Q9ZVH0\|FEZ_ARATH	2E-102	Protein FEZ
trEMBL	tr\|A0A061EFK4\|A0A061EFK4_THECC	4E-171	NAC domain protein, IPR003441 {ECO:0000313\|EMBL:EOY03443.1}
TAIR10	AT1G26870.1	4E-85	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39522430	39524386	-
GWHAAZE00000007	mRNA	39522430	39524386	-
GWHAAZE00000007	exon	39522430	39523002	-
GWHAAZE00000007	exon	39523382	39523683	-
GWHAAZE00000007	exon	39524203	39524386	-
GWHAAZE00000007	CDS	39524203	39524386	-
GWHAAZE00000007	CDS	39523382	39523683	-
GWHAAZE00000007	CDS	39522430	39523002	-

Transcript Sequence
>GWHTAAZE024324 ATGGATTCTAAGAATGATTCTTCTGACAAGATTGATGAAGTGATGTTGCCTGGTTTTCGATTTCATCCTACGGATGAAGAGCTTGTTGGGTTCTATTTGAAGAGGAAGATTCAGCAACGGCCGCTGCCTATCGAGTTAATTAAGCAAGTCGATATTTACAAATACGATCCGTGGGATCTTCCAAATCTAGCACCTACAGGGGAGAAAGAATGGTATTTTTACTGCCCAAGGGACCGTAAATACAGGAACAGTGCACGGCCAAACCGTGTCACTGGAGCCGGGTTTTGGAAGGCCACTGGAACAGACCGTCCAATATACTCCTCCGATAGCAGTAAATGCATCGGCTTAAAGAAATCTTTGGTGTTTTATAGAGGGAGAGCTGCCAAAGGCATAAAAACTGACTGGATGATGCATGAATTTAGGCTACCTTCTATCTCTGACTCGGCCCCACTCAAGAAGTTCTTGGACAAAAGTCTTCCTCCAAATGATTCATGGGCAATTTGCAGGATATTCAAAAAGACTAACTCAATGGCACAAAGAGCTCTTTCTCAATGTTGGGTATCTCCATTACCCGAAACTCCGCAATCTGATATCTTCAACCAAGGTGCACACTCCACTCCATTCACCTCAGAAAACATCTCGTACAATAACTTCCCACTTGATATTCCATCGTATAAGCCCATCAACCAAATGCCTTACAAATCATCTCCTTTTGCCATTCCAAACGGGGACCTACCCAACGGCTTCATGTTCTCACCTCCTGACCAATCAGAACCGTCTAAGTGTACAGCTGATGTGGCTTCACTGCTCTTCAACCTCTCTTCCCCTGCCTTCACGGGGGACGGCAGCAAAGCTTCTGACAGCGTTGACTTTGGTGATGGGCCACAGCAGCATTTCAACACCTTCTCGATATCGTCACCACAAGATGCACAAAGTGTTCGTGCTATCGGGTTTCCATTTAGTTTGGCTGATGAGTGGAAGCCTAGTTTGCCGTGGGATTCGCCCCCTTGTCCTAGTGAGATTTCTACTACTTATTCCGCAAACAAGTGCTATATTTAG

Network for GWHGAAZE024290

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	17	142	3.90E-37

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.801
	SRR3591706	second leaf	0.374
	SRR3591707	mature leaf	1.187
	SRR3591708	Shoot apex	0.733
	SRR3591709	Stem	3.990
	SRR3591710	White floral bud	0.495
	SRR3591711	White flower	0.302
	SRR3591712	Green floral bud	0.341
	SRR3591713	Yellow flower	0.125
SRP173429	SRR8316895	Juvenile bud stage	0.174
	SRR8316896	Juvenile bud stage	0.031
	SRR8316897	Juvenile bud stage	0.101
	SRR8316894	Third green stage	0.094
	SRR8316900	Third green stage	1.416
	SRR8316901	Third green stage	0.771
	SRR8316898	Complete white stage	0.150
	SRR8316899	Complete white stage	0.428
	SRR8316903	Complete white stage	0.089
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.089
	SRR8316905	Silver flowering stage	0.065
	SRR8316906	Gold flowering stage	0.382
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.158
	SRR6706287	Light intensity 50%	0.261
	SRR6706288	Light intensity 20%	0.292
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.813
	CNS0095593	Slightly white alabastrum(diploid) 2	0.054
	CNS0095594	Slightly white alabastrum(diploid) 3	0.389
	CNS0095595	Whole white alabastrum(diploid) 2	0.781
	CNS0095596	Whole white alabastrum(diploid) 3	0.628
	CNS0095597	Whole white alabastrum(diploid) 4	0.796
	CNS0095598	Silvery flower (diploied) 1	0.262
	CNS0095599	Silvery flower (diploied) 2	0.217
	CNS0095600	Silvery flower (diploied) 3	0.198
	CNS0095601	Golden flower (diploid) 1	0.872
	CNS0095602	Golden flower (diploid) 2	0.120
	CNS0095603	Golden flower (diploid) 3	0.381
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.377
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.236
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.347
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.389
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.161
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.060
	CNS0095611	Silvery flower (tetraploid) 2	0.069
	CNS0095612	Silvery flower (tetraploid) 3	0.204
	CNS0095613	Golden flower (tetraploid) 1	0.042
	CNS0095614	Golden flower (tetraploid) 2	0.243
	CNS0095615	Golden flower (tetraploid) 3	0.099
CRA001975	CRR073297	Stem 1	0.214
	CRR073298	Stem 2	0.639
	CRR073299	Stem 3	0.623
	CRR073300	Leaf 1	0.337
	CRR073301	Leaf 2	0.208
	CRR073302	Leaf 3	0.191
	CRR073303	Juvenile bud 1	0.200
	CRR073304	Juvenile bud 2	0.314
	CRR073305	Juvenile bud 3	0.511
	CRR073306	Third green 1	0.414
	CRR073307	Third green 2	0.400
	CRR073308	Third green 3	0.074
	CRR073309	Second white 1	0.016
	CRR073310	Second white 2	0.154
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.230
	CRR073313	Silver flowering 2	0.606
	CRR073314	Silver flowering 3	0.846
	CRR073315	Gold flowering 1	0.218
	CRR073316	Gold flowering 2	0.431
	CRR073317	Gold flowering 3	1.064
	CRR073318	Tawny withering 1	3.285
	CRR073319	Tawny withering 2	3.850
	CRR073320	Tawny withering 3	2.574