Gene detail

Detail information of GWHGAAZE024263

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264617.2	6.49273E-58	PREDICTED: cleavage stimulating factor 64 [Vitis vinifera]
Swissprot	tr\|Q9M9G6\|CTF64_ARATH	3E-10	Cleavage stimulating factor 64 {ECO:0000303\|PubMed:12379796}
trEMBL	tr\|A0A068VCB4\|A0A068VCB4_COFCA	8E-46	Coffea canephora DH200=94 genomic scaffold, scaffold_218 {ECO:0000313\|EMBL:CDP18174.1}
TAIR10	AT1G71800.1	0.008	cleavage stimulating factor 64

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38762311	38764987	+
GWHAAZE00000007	mRNA	38762311	38764987	+
GWHAAZE00000007	exon	38762311	38762796	+
GWHAAZE00000007	exon	38763798	38764133	+
GWHAAZE00000007	exon	38764856	38764987	+
GWHAAZE00000007	CDS	38762311	38762796	+
GWHAAZE00000007	CDS	38763798	38764133	+
GWHAAZE00000007	CDS	38764856	38764987	+

Transcript Sequence
>GWHTAAZE024297 ATGCCAAATATTCGGCAGGCCTCTGGTCCCCTCACACAGCCTTTTTTGCAAGATGGTCAACCGGGTCAGCAGCCTGCTGTTCAAACTTTTCCCGGGCTACCTCCACAGAATAAGGTGCACTTTGGGTTGCCACCCCAACCACAACAAGCTCAAGTGCCTGCCGGTCATCTGAATTCTTTGGTTCATAATCAGTACGCACCCTCGCAGTTTCCTGCACAGCCTCGATTTCAGAACCCGATCCTACAACAAGGTACATTACCAGGGCAGTCTGCGGTTTCAGTTCGTCCACCATTGCACTCTCAGCAGTTGGCCAATGTGAGCGTTGGACCGCCGGTTCAGCAAGTGCAACCTCCTATGATACAACAACCGAGCCAGGTTGGATCTTCAAATTTGGGGCAGAAATCTGAGTCTCAGATGATTGGTCCAAATGCAACCGTTCAACCTCCTCTTTTGATTCGTCCACCATTGATGGATCATGGATTTCAGAGCACCTCGATAATGTCCGGTTTTCCAAATAACATGAACAAGAATTCTGATAGGCTTCCACAAGTTACTAGTAATGATCCAGCTTGGACTCGGACTAGTCAAAGCTTGCCTTCAGGGTTATCTAAGAAAGAAAGCATGTCCCGTGAAAATCTGGATCCTATCAATCAACCTTCCAAAATGGTGAAATTGGATGACGGAGGAAGGGGTACCCCTTTCTTAGAGGGGAATGCCCGTGCGTCTACTTCTGCACCTGTATCATCCCAAGCATTTGGCATGTCTGGAAACCAGATTCCAAAGGCAGAGGCAGCCTCAAATTCCGAGAAACAAGTTTCTCAGCTTCCTCCAGACGTGGAGAATGCGTTGCTGCAACAAGTGTTGAATCTAACACCAGAGCAGTTAAGTTCGTTGCCTCCGGATCAGCAGCAACAAGTCATTCAGCTCCAGCAGATGCTTCGACAGCCTTCTTAA

Network for GWHGAAZE024263

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14304.7	CSTF_C	281	315	4.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14407	CSTF2, RNA15	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0031124	biological_process	mRNA 3'-end processing

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.827
	SRR3591706	second leaf	18.533
	SRR3591707	mature leaf	25.479
	SRR3591708	Shoot apex	22.565
	SRR3591709	Stem	35.522
	SRR3591710	White floral bud	37.072
	SRR3591711	White flower	51.566
	SRR3591712	Green floral bud	52.516
	SRR3591713	Yellow flower	37.487
SRP173429	SRR8316895	Juvenile bud stage	24.323
	SRR8316896	Juvenile bud stage	33.142
	SRR8316897	Juvenile bud stage	18.165
	SRR8316894	Third green stage	13.505
	SRR8316900	Third green stage	47.191
	SRR8316901	Third green stage	45.096
	SRR8316898	Complete white stage	17.204
	SRR8316899	Complete white stage	53.186
	SRR8316903	Complete white stage	26.705
	SRR8316902	Silver flowering stage	19.871
	SRR8316904	Silver flowering stage	23.011
	SRR8316905	Silver flowering stage	12.462
	SRR8316906	Gold flowering stage	39.810
	SRR8316907	Gold flowering stage	41.273
	SRR8316908	Gold flowering stage	49.734
SRP132670	SRR6706286	Control	44.888
	SRR6706287	Light intensity 50%	46.154
	SRR6706288	Light intensity 20%	49.386
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.671
	CNS0095593	Slightly white alabastrum(diploid) 2	28.532
	CNS0095594	Slightly white alabastrum(diploid) 3	30.824
	CNS0095595	Whole white alabastrum(diploid) 2	29.684
	CNS0095596	Whole white alabastrum(diploid) 3	30.683
	CNS0095597	Whole white alabastrum(diploid) 4	32.223
	CNS0095598	Silvery flower (diploied) 1	31.584
	CNS0095599	Silvery flower (diploied) 2	24.270
	CNS0095600	Silvery flower (diploied) 3	45.215
	CNS0095601	Golden flower (diploid) 1	19.534
	CNS0095602	Golden flower (diploid) 2	42.623
	CNS0095603	Golden flower (diploid) 3	44.281
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.618
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.914
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.460
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.811
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.531
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.828
	CNS0095610	Silvery flower (tetraploid) 1	37.698
	CNS0095611	Silvery flower (tetraploid) 2	45.395
	CNS0095612	Silvery flower (tetraploid) 3	39.314
	CNS0095613	Golden flower (tetraploid) 1	26.421
	CNS0095614	Golden flower (tetraploid) 2	41.081
	CNS0095615	Golden flower (tetraploid) 3	45.015
CRA001975	CRR073297	Stem 1	42.154
	CRR073298	Stem 2	36.960
	CRR073299	Stem 3	38.637
	CRR073300	Leaf 1	51.918
	CRR073301	Leaf 2	47.388
	CRR073302	Leaf 3	49.665
	CRR073303	Juvenile bud 1	55.440
	CRR073304	Juvenile bud 2	43.642
	CRR073305	Juvenile bud 3	67.554
	CRR073306	Third green 1	31.539
	CRR073307	Third green 2	26.468
	CRR073308	Third green 3	34.582
	CRR073309	Second white 1	28.208
	CRR073310	Second white 2	37.621
	CRR073311	Second white 3	30.486
	CRR073312	Silver flowering 1	31.823
	CRR073313	Silver flowering 2	34.112
	CRR073314	Silver flowering 3	33.807
	CRR073315	Gold flowering 1	30.340
	CRR073316	Gold flowering 2	36.459
	CRR073317	Gold flowering 3	21.880
	CRR073318	Tawny withering 1	53.275
	CRR073319	Tawny withering 2	52.362
	CRR073320	Tawny withering 3	54.717