Gene detail

Detail information of GWHGAAZE024261

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074131.1	0	PREDICTED: protein FEZ-like [Sesamum indicum]
Swissprot	tr\|Q84K00\|NAC78_ARATH	1E-70	NAC domain-containing protein 78
trEMBL	tr\|D7TFR5\|D7TFR5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29338.3}
TAIR10	AT1G34190.1	3E-111	NAC domain containing protein 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38748576	38751612	+
GWHAAZE00000007	mRNA	38748576	38751612	+
GWHAAZE00000007	exon	38748576	38748944	+
GWHAAZE00000007	exon	38749812	38750647	+
GWHAAZE00000007	exon	38750731	38750950	+
GWHAAZE00000007	exon	38751263	38751612	+
GWHAAZE00000007	five_prime_UTR	38748576	38748757	+
GWHAAZE00000007	CDS	38748758	38748944	+
GWHAAZE00000007	CDS	38749812	38750647	+
GWHAAZE00000007	CDS	38750731	38750950	+
GWHAAZE00000007	CDS	38751263	38751612	+

Transcript Sequence
>GWHTAAZE024295 GTCCACCATCCCTCTGGGGTCTCAAACCCCAAAATTCTCAACCCTAACCCTCCTCATTTGTGACTCTGAAAATCCCTCTCGTCTGTTAGGGTTTCCTCTCGCTCACAATCAAAACAATTTTTGCAGATTAAGTTTTCATTATTTCAATTACGAACACTAATTATTTAGGATTATCTGAATCAATGAAGGTTTCCGATTCTTCGTCGTGTTTTAGCGACGCAAAATTCTTTCCACCGGGCTTTCGGTTCCATCCGACGGACGAGGAGCTTGTTCTGTACTATCTGAAGAGGAAGATCTGTGGTAAAAGGCTAAAGCTTGATATTGTCGCTGAAACTGATGTATATAAGTGGGATCCAGAGGATTTGCCTGGACTATCTAAGTTAAGAACTGGGGACAGGCAATGGTTCTTCTTTAGCCACAGAGATAGAAAGTATCCAAATGGAGCAAGATCGAATAGGGCAACCATGCACGGTTACTGGAAAGCAACTGGAAAGGACCGCACAATTACATGTAATTCTCGCTCAGTTGGGAATAAGAAAACCCTCGTTTTCTACAAAGGCCGTGCTCCTTCTGGTGAACGCACAGACTGGGTGATGCATGAATATACCCTAGATGAAGAGGAGCTAAAGCGGTGCCAGTTTGTGAAGAATTATTATGCATTGTACAAGGTCTTCAAGAAGAGTGGACCTGGTCCGAAAAACGGTGAGCAGTACGGTGCGCCCTTTAAAGAAGAGGAGTGGGCTGATGATGATGAGTGCTTTGATTTTAATGGCTTTGTTGACCGTGAGAATATAAAGGATGTTAATGGAGTATGTTTTAATAATATCAAAGATAATGGTCAACAACAGTCACTTCTAAATGATCTAGAGGAACTACTGAACCGAGATGAGTTGGAGCTTATTCCATCACTTGCGTTTGATAACAATTATGCACTAGATCAGCTTGTTGGTGAAGAAGAAACCCAAAGTACCTTGGTGGACCAATCCTCGAGGGGAGTTCATTTAGGTGACCAGGTGCAATATAATGTGCAGGGAAGCATTGATTTGACTCAGTCAACCGTGTCCCACTTACAACTGTATGAGGGACCCGAGGTCACATCGGCTCCAAACATATATGGGCAAGAGCCTCTGGTGGTTGAAGAAGATTTTCTTGAAATGGACGATCTCATAGGTCCAGAACCTACTGTGCAGAATTGTGAGAAACCACCCCTTGAACCGGAGCAAATTTCACAACCATATATGAATAATCTCGAGAATGGAATGTCAAATCTTGTAAGCAATATAGATAATGGGCCATTAAATCACCAGGTTCAACTCTACACAGATGATGCAAATCAGGCCGGTTATCAGATGTGGACCGACGATCAACAATGGGTCTCTGCTCTAGCAGAACCAAATCAAATGGCTAATCCTCCACTAAATTCAGGTGTGACGTGTGATGGTAATTCCATAAATAGGCAAGGCAATGAGGACAATAATGGTAGAAACTCATGGTTCACTTCTGTACTGTGGGGCTTTGTGGATTCGATACCAACTACCCCTGCTTCAGCTTCGGAGGGTACTCTCGTAAATAAGGCCTTTGAGCGTATGTCAAGCTTTGGTAGGGTGAGAATGAATGTCATAAGCACGAGCAGCCACCCTTCTTCAGGTAACACAGCGAAGGGAGGATCCAAGTGTGTCCTTTTATGTTTTTCGATTCTTGGAGTATTATGTGCTATTTTGTGGATGTTGATAGGAACATCTGCGGGTGTGTCGGGGAGATACATGTCTTCATGA

Network for GWHGAAZE024261

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	17	143	3.60E-36

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.378
	SRR3591706	second leaf	30.463
	SRR3591707	mature leaf	40.904
	SRR3591708	Shoot apex	46.742
	SRR3591709	Stem	71.008
	SRR3591710	White floral bud	42.129
	SRR3591711	White flower	70.361
	SRR3591712	Green floral bud	39.983
	SRR3591713	Yellow flower	67.127
SRP173429	SRR8316895	Juvenile bud stage	47.710
	SRR8316896	Juvenile bud stage	74.806
	SRR8316897	Juvenile bud stage	23.875
	SRR8316894	Third green stage	21.258
	SRR8316900	Third green stage	52.286
	SRR8316901	Third green stage	54.348
	SRR8316898	Complete white stage	18.301
	SRR8316899	Complete white stage	87.582
	SRR8316903	Complete white stage	28.848
	SRR8316902	Silver flowering stage	30.189
	SRR8316904	Silver flowering stage	34.088
	SRR8316905	Silver flowering stage	20.117
	SRR8316906	Gold flowering stage	93.050
	SRR8316907	Gold flowering stage	76.953
	SRR8316908	Gold flowering stage	85.989
SRP132670	SRR6706286	Control	55.083
	SRR6706287	Light intensity 50%	53.617
	SRR6706288	Light intensity 20%	53.847
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.594
	CNS0095593	Slightly white alabastrum(diploid) 2	39.050
	CNS0095594	Slightly white alabastrum(diploid) 3	31.574
	CNS0095595	Whole white alabastrum(diploid) 2	26.008
	CNS0095596	Whole white alabastrum(diploid) 3	21.895
	CNS0095597	Whole white alabastrum(diploid) 4	25.207
	CNS0095598	Silvery flower (diploied) 1	59.909
	CNS0095599	Silvery flower (diploied) 2	57.852
	CNS0095600	Silvery flower (diploied) 3	82.664
	CNS0095601	Golden flower (diploid) 1	84.352
	CNS0095602	Golden flower (diploid) 2	108.877
	CNS0095603	Golden flower (diploid) 3	103.571
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.692
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.931
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.322
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.676
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.016
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.319
	CNS0095610	Silvery flower (tetraploid) 1	62.387
	CNS0095611	Silvery flower (tetraploid) 2	66.378
	CNS0095612	Silvery flower (tetraploid) 3	29.622
	CNS0095613	Golden flower (tetraploid) 1	57.595
	CNS0095614	Golden flower (tetraploid) 2	71.750
	CNS0095615	Golden flower (tetraploid) 3	70.562
CRA001975	CRR073297	Stem 1	50.465
	CRR073298	Stem 2	45.294
	CRR073299	Stem 3	45.573
	CRR073300	Leaf 1	51.346
	CRR073301	Leaf 2	51.961
	CRR073302	Leaf 3	45.090
	CRR073303	Juvenile bud 1	41.391
	CRR073304	Juvenile bud 2	34.805
	CRR073305	Juvenile bud 3	59.240
	CRR073306	Third green 1	13.477
	CRR073307	Third green 2	12.909
	CRR073308	Third green 3	15.874
	CRR073309	Second white 1	20.394
	CRR073310	Second white 2	18.102
	CRR073311	Second white 3	20.037
	CRR073312	Silver flowering 1	33.830
	CRR073313	Silver flowering 2	27.740
	CRR073314	Silver flowering 3	26.160
	CRR073315	Gold flowering 1	40.699
	CRR073316	Gold flowering 2	52.067
	CRR073317	Gold flowering 3	44.612
	CRR073318	Tawny withering 1	48.760
	CRR073319	Tawny withering 2	45.147
	CRR073320	Tawny withering 3	48.310