Gene detail

Detail information of GWHGAAZE024248

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008237456.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Prunus mume]
COG	YP_004775215.1	3E-59	RHS repeat-associated core domain-containing protein
Swissprot	tr\|C0LGF5\|Y1341_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g34110 (Precursor)
trEMBL	tr\|A0A067JQL2\|A0A067JQL2_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP26177.1}
TAIR10	AT1G34110.1	0	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38589018	38591546	+
GWHAAZE00000007	mRNA	38589018	38591546	+
GWHAAZE00000007	exon	38589018	38591126	+
GWHAAZE00000007	exon	38591160	38591546	+
GWHAAZE00000007	CDS	38589018	38591126	+
GWHAAZE00000007	CDS	38591160	38591546	+

Transcript Sequence
>GWHTAAZE024282 ATGTTCTTGGTAATCTTGAATGCAACAGTGACAGCAGTAGTTTCTCTCTCTAGTGATGGACAAGCCCTTCTCTCTCTACTTTCCTCTTCCGACCCAGAATCCAAATCCTCCTCTAAAGTTCTTTCCTCTTGGAACCCATCTAGCCAAACACCCTGTTCTTGGGAAGGAATCACTTGTTCTCCCCAAGAAAGGGTTATCTCACTCTCACTCCCAAACACTTTCCTCAATCTTTCTTCAATTCCTTCACAAATTTCCTCTCTTTCCTCTCTTCAACTCCTCAATCTTTCTTCCACTAATGTGTCTGGTACTATTCCCCCTTCGTTTGGCTCACTGACCCATCTTCGCCTTTTGGACCTTTCCTCAAATTCCCTGGTAGGCCTAATTCCCCCTGAGCTAGGAAAACTCAGTTCCCTCCAATTCCTTTTCCTGAATTCAAATCAGTTGTCAGGGAAAATCCCAAAAGAGTTGGCTAATCTTTCATCACTACAAGTGTTCTGTGTTCAAGATAATCTTATAAATGGGTCAATTCCTTCGCAGTTTGGCTCATTAGTGTCCCTTCAACAGCTAAGAATTGGGGGAAACCCTTTTTTAACAGGTGAAATCCCCCCACAATTAGGGTTTCTCACGAATCTTACAACATTTGGGGCTGCCGCAACTGGGCTTTCTGGTGTTATACCACCCACATTTGGGAACTTGATTAATCTTCAGACACTTGCAATTTATGACACTGAGGTGTTTGGTTCAATCCCCCCTGAACTTGGGTTGTGCTCTGAGCTTAGAAACTTGTATCTCCACATGAACAAGCTCACCGGTTCAATCCCTCCTCAACTGGGTAAACTGCAAAAGCTAACTAGCTTGCTTCTTTGGGGCAATTCCATCACTGGCCCAATCCCAGCCGAGCTTTCGAATTGTTCTTCACTTGTGGTTCTAGATGTATCAGCGAATGATATAACAGGGGAGATTCCTCTTGATTTTGGCAAGTTGGTTGTTCTTGAACAGCTCCATTTATCTGATAATTTGCTCACGGGTTCAATCCCTTTTCAGTTAAGTAACTGTACGAGTTTAACGGCTCTTCAGCTCGACAAGAACCAGTTATCGGGTCAAATCCCGTGGCAAGTTGGTAATTTGAAGTTCTTGCAGAGTTTCTTCTTGTGGGGTAATTTGGTTTCGGGTACTATACCGTCCTCATTTGGGAACTGTACTGAATTATATGCGCTTGACCTCTCGAGGAACAAGCTCACGGGCTCAATGCCGGAGGAGATTTTCAGTTTGAAGAAGCTGAGCAAACTGTTACTGCTTGGGAATTCATTATCGGGCAGATTGCCTAAGAGTGTTGCCAAATGCCAGTCTTTGGTGAGACTACGGCTTGGCGAAAACCAGCTCTCTGGTCAGATTCCTAAGGAGATTGGCCAATTATCGAACCTCGTGTTTCTTGATTTGTACATGAACCATTTCTCTGGTGTTTTGCCTTTGGAGATCAGTAATATATCGGTTCTTGAGTTGTTTGATATTCATAATAACCATTTAACGGGCGAAATACCGGCTGAATTAGGGGAGCTTGTGAATTTAGAGCAACTTGATCTTAGCAGAAACAGCTTTAGTGGTTCGATCCCTTGGAGTTTTGGTAATTTGAGTTACCTAAACAAACTCATTCTCAATAATAATCTGCTTATCGGTTCAATTCCAAAATCTTTTCAAAATTTGCAGAAACTAACTTTGCTTGATTTGAGCTTCAATAGTCTCTCTGGTGCAATTTTGCCTGAGATTGGTTATGTTACAAGCTTGACTATTAGTCTTGATTTAAGCTCAAACGCGTTTGCTGGTGAAATCCCAGAGTCAATCTCCAGTTTGACTCAATTACAGTCGCTGGATCTTTCTCATAATTCGCTTTATGGAAAGATTACGATTCTTGGTTCACTTACTAGCCTCACTTCCTTGAATGTTTCATACAATAATTTCTCAGGTCCCATACCGGTTACACCTTTTTTCAGAACTCTATCGTCAAATTCATTCATCGAAAACCCGAATTTGTGTCAGTCTGTTGATGGGTTCACTTGTTCTTCACGTCTAGCTCAAAAAAACGCCTTGAAATCTGCGAAAACAATAGCAGCCATTATTGCCACATGGATTATCGTTACTCGAAACCACAACTACATGGTGGAAAAATCTTTGGGCACATCAGGTTCCGTTTCCACCGGGGAGGATTTTTCTTATCCGTGGACTTTCATTCCCTTCCAAAAGCTCGGTTTCACCGTTGACAACATCTTGGATTGCTTGAAAGACGAGAATATCCTTGGAAAAGGCTGCTCTGGAGTTGTTTACAAGGCAGAAATGCCTAACGGTGAAGTGGTTGCAGTTAAAAAGCTATGGAAAACAAAGAAAGACGAAGACCCGGTGGATTCCTTCGCTGCGGAAATCCAAATCCTTGGCCACATTCGGCATAGAAACATAGTGAAGCTCGTCGGGTACTGTTCCAACAAAAGTGTTAAGTTGCTG

Network for GWHGAAZE024248

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	17	60	3.70E-10
PF13855.7	LRR_8	89	148	8.10E-08
PF13855.7	LRR_8	379	437	5.30E-07
PF00560.34	LRR_1	522	544	0.021
PF00069.26	Pkinase	761	828	1.60E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.292
	SRR3591706	second leaf	0.286
	SRR3591707	mature leaf	0.084
	SRR3591708	Shoot apex	1.098
	SRR3591709	Stem	0.053
	SRR3591710	White floral bud	0.222
	SRR3591711	White flower	0.245
	SRR3591712	Green floral bud	0.949
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.131
	SRR8316896	Juvenile bud stage	0.747
	SRR8316897	Juvenile bud stage	0.102
	SRR8316894	Third green stage	0.168
	SRR8316900	Third green stage	0.484
	SRR8316901	Third green stage	0.534
	SRR8316898	Complete white stage	0.034
	SRR8316899	Complete white stage	0.416
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.108
	SRR8316904	Silver flowering stage	0.028
	SRR8316905	Silver flowering stage	0.033
	SRR8316906	Gold flowering stage	0.045
	SRR8316907	Gold flowering stage	0.134
	SRR8316908	Gold flowering stage	0.034
SRP132670	SRR6706286	Control	0.267
	SRR6706287	Light intensity 50%	0.281
	SRR6706288	Light intensity 20%	0.687
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.283
	CNS0095593	Slightly white alabastrum(diploid) 2	0.165
	CNS0095594	Slightly white alabastrum(diploid) 3	0.192
	CNS0095595	Whole white alabastrum(diploid) 2	0.062
	CNS0095596	Whole white alabastrum(diploid) 3	0.130
	CNS0095597	Whole white alabastrum(diploid) 4	0.323
	CNS0095598	Silvery flower (diploied) 1	0.164
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.232
	CNS0095601	Golden flower (diploid) 1	0.201
	CNS0095602	Golden flower (diploid) 2	0.073
	CNS0095603	Golden flower (diploid) 3	0.219
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.326
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.243
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.864
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.205
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.129
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.725
	CNS0095610	Silvery flower (tetraploid) 1	0.223
	CNS0095611	Silvery flower (tetraploid) 2	0.148
	CNS0095612	Silvery flower (tetraploid) 3	0.247
	CNS0095613	Golden flower (tetraploid) 1	0.070
	CNS0095614	Golden flower (tetraploid) 2	0.101
	CNS0095615	Golden flower (tetraploid) 3	0.120
CRA001975	CRR073297	Stem 1	0.643
	CRR073298	Stem 2	0.564
	CRR073299	Stem 3	0.309
	CRR073300	Leaf 1	1.502
	CRR073301	Leaf 2	0.627
	CRR073302	Leaf 3	0.687
	CRR073303	Juvenile bud 1	0.900
	CRR073304	Juvenile bud 2	0.586
	CRR073305	Juvenile bud 3	1.177
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.195
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.074
	CRR073316	Gold flowering 2	0.015
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.017
	CRR073319	Tawny withering 2	0.052
	CRR073320	Tawny withering 3	0.000