Detail information of GWHGAAZE024238


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008237480.10PREDICTED: protein GIGANTEA [Prunus mume]
Swissprottr|Q9SQI2|GIGAN_ARATH0Protein GIGANTEA
trEMBLtr|F6H6Q8|F6H6Q8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47898.1}
TAIR10AT1G22770.10gigantea protein (GI)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3829240238306856-
GWHAAZE00000007mRNA3829240238306856-
GWHAAZE00000007exon3830669238306856-
GWHAAZE00000007exon3830543638305605-
GWHAAZE00000007exon3830465038304721-
GWHAAZE00000007exon3830439338304447-
GWHAAZE00000007exon3830415638304298-
GWHAAZE00000007exon3830340438303675-
GWHAAZE00000007exon3830122138301276-
GWHAAZE00000007exon3830036238300605-
GWHAAZE00000007exon3829958438299734-
GWHAAZE00000007exon3829833838298547-
GWHAAZE00000007exon3829724138297665-
GWHAAZE00000007exon3829617038297169-
GWHAAZE00000007exon3829508338295151-
GWHAAZE00000007exon3829408138294299-
GWHAAZE00000007exon3829362738293719-
GWHAAZE00000007exon3829284738292868-
GWHAAZE00000007exon3829240238292700-
GWHAAZE00000007five_prime_UTR3830669238306856-
GWHAAZE00000007five_prime_UTR3830552338305605-
GWHAAZE00000007CDS3830543638305522-
GWHAAZE00000007CDS3830465038304721-
GWHAAZE00000007CDS3830439338304447-
GWHAAZE00000007CDS3830415638304298-
GWHAAZE00000007CDS3830340438303675-
GWHAAZE00000007CDS3830122138301276-
GWHAAZE00000007CDS3830036238300605-
GWHAAZE00000007CDS3829958438299734-
GWHAAZE00000007CDS3829833838298547-
GWHAAZE00000007CDS3829724138297665-
GWHAAZE00000007CDS3829617038297169-
GWHAAZE00000007CDS3829508338295151-
GWHAAZE00000007CDS3829408138294299-
GWHAAZE00000007CDS3829362738293719-
GWHAAZE00000007CDS3829284738292868-
GWHAAZE00000007CDS3829240238292700-
Transcript Sequence

Network for GWHGAAZE024238

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12124GI Circadian rhythm - plant map04712

Gene Ontology

GO term OntologyName
GO:2000028biological_processregulation of photoperiodism, flowering

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf52.534
SRR3591706second leaf37.960
SRR3591707mature leaf88.999
SRR3591708Shoot apex22.402
SRR3591709Stem86.775
SRR3591710White floral bud324.174
SRR3591711White flower286.615
SRR3591712Green floral bud101.685
SRR3591713Yellow flower184.594
SRP173429 SRR8316895Juvenile bud stage 15.224
SRR8316896Juvenile bud stage 21.428
SRR8316897Juvenile bud stage 10.457
SRR8316894Third green stage 12.012
SRR8316900Third green stage 36.629
SRR8316901Third green stage 37.253
SRR8316898Complete white stage 76.409
SRR8316899Complete white stage 78.929
SRR8316903Complete white stage 144.836
SRR8316902Silver flowering stage98.565
SRR8316904Silver flowering stage167.516
SRR8316905Silver flowering stage70.714
SRR8316906Gold flowering stage 156.680
SRR8316907Gold flowering stage 163.205
SRR8316908Gold flowering stage 183.345
SRP132670SRR6706286Control39.834
SRR6706287Light intensity 50%43.566
SRR6706288Light intensity 20%41.628
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.598
CNS0095593Slightly white alabastrum(diploid) 218.342
CNS0095594Slightly white alabastrum(diploid) 315.392
CNS0095595Whole white alabastrum(diploid) 225.416
CNS0095596Whole white alabastrum(diploid) 323.169
CNS0095597Whole white alabastrum(diploid) 429.307
CNS0095598Silvery flower (diploied) 166.898
CNS0095599Silvery flower (diploied) 249.452
CNS0095600Silvery flower (diploied) 3314.544
CNS0095601Golden flower (diploid) 152.978
CNS0095602Golden flower (diploid) 2234.910
CNS0095603Golden flower (diploid) 3228.160
CNS0095604Slightly white alabastrum(tetraploid) 121.494
CNS0095605Slightly white alabastrum(tetraploid) 218.313
CNS0095606Slightly white alabastrum(tetraploid) 329.708
CNS0095607Whole white alabastrum(tetraploid) 123.525
CNS0095608Whole white alabastrum(tetraploid) 224.562
CNS0095609Whole white alabastrum(tetraploid) 335.349
CNS0095610Silvery flower (tetraploid) 1206.228
CNS0095611Silvery flower (tetraploid) 2259.454
CNS0095612Silvery flower (tetraploid) 3308.741
CNS0095613Golden flower (tetraploid) 1120.108
CNS0095614Golden flower (tetraploid) 2200.994
CNS0095615Golden flower (tetraploid) 3359.872
CRA001975CRR073297Stem 137.816
CRR073298Stem 233.172
CRR073299Stem 336.194
CRR073300Leaf 140.645
CRR073301Leaf 240.231
CRR073302Leaf 339.928
CRR073303Juvenile bud 147.641
CRR073304Juvenile bud 249.705
CRR073305Juvenile bud 368.459
CRR073306Third green 15.340
CRR073307Third green 212.853
CRR073308Third green 316.814
CRR073309Second white 120.462
CRR073310Second white 215.478
CRR073311Second white 333.847
CRR073312Silver flowering 153.737
CRR073313Silver flowering 262.689
CRR073314Silver flowering 368.807
CRR073315Gold flowering 133.839
CRR073316Gold flowering 249.641
CRR073317Gold flowering 349.415
CRR073318Tawny withering 164.029
CRR073319Tawny withering 252.420
CRR073320Tawny withering 359.625