Gene detail

Detail information of GWHGAAZE024227

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006390755.1	2.6018E-125	hypothetical protein EUTSA_v10018753mg [Eutrema salsugineum]
Swissprot	tr\|Q96520\|PER12_ARATH	2E-103	Peroxidase 12 (Precursor)
trEMBL	tr\|V4MA62\|V4MA62_EUTSA	1E-125	Uncharacterized protein {ECO:0000313\|EMBL:ESQ28041.1}
TAIR10	AT1G71695.1	2E-84	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38079789	38083584	+
GWHAAZE00000007	mRNA	38079789	38083584	+
GWHAAZE00000007	exon	38079789	38080061	+
GWHAAZE00000007	exon	38082967	38083584	+
GWHAAZE00000007	CDS	38079789	38080061	+
GWHAAZE00000007	CDS	38082967	38083584	+

Transcript Sequence
>GWHTAAZE024261 ATGGCTTCCACTACTGCAAGTAGTGCTTCTTTAAGCTCTCTACTTTCATTGTTCATGTGTTGTATTCTATTATTATTATTATCTTCACACTTGTATGTTATAAAGGCTCAAAGCATTCCACCTTTAGTGAAAGGACTCTCATGGGATTTTTATGAAAAAACCTGTCCTAAATTGGAATTCATTGTTAGAAAACAGCTTCAAAAAGTTTTCAAGAATGATATTGGCCAAGCTCCTGGCTTGCTTCGCCTCCATTTCCATGATTGCTTTGTTCAGTCTGGAGGGCCTGATTACAGTGTTCCCTTAGGAAGACGTGATTCACTAACATTTGCAACAAGAGAAACAACCATTGCCAACATTCCTCGACCAACAGCTAACACAAGTGCGATTCTCACATTTCTCGCCACCAAAAACTTCGACCGAACTAATGTAGTCGCCCTCTCCGGGGCTCACACCATCGGCATCAGCCACTGCGAATCCTTCACGCCTCGACTGTACCCAAACCAAGATCCCATTATGGACAAGACCCTTGCCAACAATCTAAAGGGCATTTGCCCCACTCGAAACTCCAACAACACCACCATCATGGATATTCGATCGCCAAACCTCTTTGACAATAAGTACTACGTTGGTCTTATGAATCGACAGGGCCTTTTCACGTCTGACCAAGACTTATACACTGACAGGCGGACTAGGGGGATTGTTACAAACTTTGTGGTTAATCAAACGCTTTTCTTTGAAAAGTTTGTTTTTGCAATGATTAAGATGGGGCAACTGAGCGTGTTGACTGGGACGCAAGGAGAAATTCGTAGGAATTGTTCTGCTAGAAATTCCGATAGATCAACCACGTTGTCTATATTAGAAGAGGAGCAGAAGGGCTGGTCAGAGTTTTGA

Network for GWHGAAZE024227

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	91	238	8.40E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0006979	biological_process	response to oxidative stress
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.108
	SRR3591706	second leaf	0.482
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	10.662
	SRR3591709	Stem	52.260
	SRR3591710	White floral bud	0.096
	SRR3591711	White flower	0.184
	SRR3591712	Green floral bud	1.179
	SRR3591713	Yellow flower	0.019
SRP173429	SRR8316895	Juvenile bud stage	0.192
	SRR8316896	Juvenile bud stage	0.244
	SRR8316897	Juvenile bud stage	0.083
	SRR8316894	Third green stage	0.011
	SRR8316900	Third green stage	0.168
	SRR8316901	Third green stage	0.148
	SRR8316898	Complete white stage	0.034
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.104
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.046
	SRR6706287	Light intensity 50%	0.077
	SRR6706288	Light intensity 20%	0.036
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.003
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.008
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.090
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.280
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.046
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.236
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.008
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.054
	CNS0095610	Silvery flower (tetraploid) 1	0.019
	CNS0095611	Silvery flower (tetraploid) 2	0.178
	CNS0095612	Silvery flower (tetraploid) 3	0.092
	CNS0095613	Golden flower (tetraploid) 1	0.006
	CNS0095614	Golden flower (tetraploid) 2	0.059
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.650
	CRR073298	Stem 2	0.154
	CRR073299	Stem 3	0.963
	CRR073300	Leaf 1	0.038
	CRR073301	Leaf 2	0.013
	CRR073302	Leaf 3	0.124
	CRR073303	Juvenile bud 1	0.098
	CRR073304	Juvenile bud 2	0.099
	CRR073305	Juvenile bud 3	0.181
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.128
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.047
	CRR073311	Second white 3	0.019
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.008
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.180
	CRR073316	Gold flowering 2	0.575
	CRR073317	Gold flowering 3	0.949
	CRR073318	Tawny withering 1	10.031
	CRR073319	Tawny withering 2	10.996
	CRR073320	Tawny withering 3	26.657