Gene detail

Detail information of GWHGAAZE024198

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006364133.1	5.405E-171	PREDICTED: trihelix transcription factor GTL1-like [Solanum tuberosum]
Swissprot	tr\|Q39117\|TGT2_ARATH	2E-132	Trihelix transcription factor GT-2
trEMBL	tr\|K4DFY2\|K4DFY2_SOLLC	4E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g056510.1.1}
TAIR10	AT1G76880.1	3E-59	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	37249825	37252623	+
GWHAAZE00000007	mRNA	37249825	37252623	+
GWHAAZE00000007	exon	37249825	37250069	+
GWHAAZE00000007	exon	37251058	37252477	+
GWHAAZE00000007	exon	37252576	37252623	+
GWHAAZE00000007	CDS	37249825	37250069	+
GWHAAZE00000007	CDS	37251058	37252477	+
GWHAAZE00000007	CDS	37252576	37252623	+

Transcript Sequence
>GWHTAAZE024232 ATGCTACAGAGCATTTCAGATCAAACGACCAATTCAGGCGACGGTGCCGGCCCCGGCCCGTCGGAATCACGAGCCGCCGGCGGTGGAGAAATGGGTTTTTTGAGTGAGGAGGGTGAGAGGAATTCTGGCGGCGGAAACCGGTGGCCGAGGCAAGAAACGGTGGCTCTGATCAACATAAGGACAGATATGGACGTTGCTTTTCGGGATTCGAGCCTCAAAGGACCATTATGGGATGAAGTTTCAAGGAAGCTAGCAGCACTTGGGTATCATCGAAGCGCCAAGAAATGCAAAGAAAAATTCGAGAACGTTTATAAATACCACAAGAGAACCAAAGATGGCCGAATTTCCAAACAAGACGGTAAAACCTATCGATTTTTTGAACAGTTAGAGGCACTCGAAGGCCAAACTTCAACTCCAATTACACCTTCAATTCAAGCACCTACCCGATTGACAAATAGTACCAATAATAATATTGCAAGTTTACCACAAACTTGTAATGTGCCATCGCTCACAAATTTTGCGAATGTGTCGCAAAATAATGGATCTCCTATTGTAACGACAACAAGCAATGCCATTAGTCATTCCAATATTCACTCTGGGACCGTTTCGAATTCGACCTCCTCTTCCACTTCGTCAGAGCCAGAGAGGAGGAGGGGGAAGAGGAAGAGGAAGTGGAAGGACTTTTTCGAGAGGATAATGAAGGAGGTGATCGAGAAGCAGGAAAAACTGCAGATGAGATTCTTGGAAACACTGGAGAGACGCGAGCGTGACAGAATGGTAAGAGAGGAGGCCTGGAGGGTACAAGAAATGGCTAAAATGAACCGAGAGCACGATGTTTTAGTACATGAGAGATCTGTATCGGCTGCCAAGGATGCAGCCGTTATTGCATTTTTGCAAAAAATGACTGAGCAAGGCCCAATAAGCCCAGACTTTCAACCCCAAATGTCAATTCAAGTAAAATTACAAGAAAATCCTTTACAACAACCGCTGCCAGCACCATCACCAGTATCACTTCAACCACCAACACAGACACAAGCAGCACCAACCCCACCATTACTAGTATCTCTACAACCACAAATACAAACGCCAGTTCCAGTTCCAGCTTCAGCTCCAGCACCAGCACCAGCATTGCCGATAAAGAATATAGATAACATAGGCGATAACTCAATCCCACCTAGCCCGTCTAGATGGCCGAAAGCTGAGATTCAAGCACTAATTACCCTCCGAACCACACTTGACATGAAATATCAAGAAAACGGGCCGAAAGGGCCACTATGGGAAGAAATATCAATGGGAATGAGAAGGCTAGGGTACAATCGAAACGCGAAGAGATGCAAGGAGAAGTGGGAGAACATAAACAAGTACTACAAGAAGATGAAAGAGAGCAACAAGAAGAGGCCACAAGATGCTAAAACATGCCCATATTTTCACCAACTAGAGGCCATTTACAAAGAGAAAGAGAAAGGGTCTTTGTCTTTGGGTCCGAACTCGGAGAATCTAGCGGCGCCGATCATGGCCATGCCGGAGCAGCAGTGGCCGGCAGTTACAGATCCGGTGGCTTCCACCGCGGATCAGGGTGGTCAAAGTGTTGACCAGAACAATGATGATGAAGAAAGTGGGGAGGATATTGAAGATGAAGAGGATGAAAGAGATGCATACGAGATAATTGCATGTCAGATCCAAGGTGGGGAAAATTTATTTGAAATGCATTGA

Network for GWHGAAZE024198

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	46	132	5.30E-19
PF13837.7	Myb_DNA-bind_4	396	482	5.90E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	81.105
	SRR3591706	second leaf	42.731
	SRR3591707	mature leaf	25.871
	SRR3591708	Shoot apex	43.407
	SRR3591709	Stem	38.206
	SRR3591710	White floral bud	131.019
	SRR3591711	White flower	107.281
	SRR3591712	Green floral bud	72.549
	SRR3591713	Yellow flower	80.368
SRP173429	SRR8316895	Juvenile bud stage	33.069
	SRR8316896	Juvenile bud stage	51.218
	SRR8316897	Juvenile bud stage	17.303
	SRR8316894	Third green stage	26.158
	SRR8316900	Third green stage	91.046
	SRR8316901	Third green stage	87.656
	SRR8316898	Complete white stage	82.574
	SRR8316899	Complete white stage	103.193
	SRR8316903	Complete white stage	158.190
	SRR8316902	Silver flowering stage	71.266
	SRR8316904	Silver flowering stage	99.564
	SRR8316905	Silver flowering stage	49.795
	SRR8316906	Gold flowering stage	140.144
	SRR8316907	Gold flowering stage	117.618
	SRR8316908	Gold flowering stage	106.538
SRP132670	SRR6706286	Control	121.137
	SRR6706287	Light intensity 50%	115.097
	SRR6706288	Light intensity 20%	104.043
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.766
	CNS0095593	Slightly white alabastrum(diploid) 2	27.822
	CNS0095594	Slightly white alabastrum(diploid) 3	26.963
	CNS0095595	Whole white alabastrum(diploid) 2	23.375
	CNS0095596	Whole white alabastrum(diploid) 3	21.986
	CNS0095597	Whole white alabastrum(diploid) 4	30.593
	CNS0095598	Silvery flower (diploied) 1	48.483
	CNS0095599	Silvery flower (diploied) 2	39.707
	CNS0095600	Silvery flower (diploied) 3	160.113
	CNS0095601	Golden flower (diploid) 1	46.144
	CNS0095602	Golden flower (diploid) 2	129.350
	CNS0095603	Golden flower (diploid) 3	126.024
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.289
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.727
	CNS0095606	Slightly white alabastrum(tetraploid) 3	90.432
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.395
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.881
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.059
	CNS0095610	Silvery flower (tetraploid) 1	223.051
	CNS0095611	Silvery flower (tetraploid) 2	215.681
	CNS0095612	Silvery flower (tetraploid) 3	234.672
	CNS0095613	Golden flower (tetraploid) 1	164.975
	CNS0095614	Golden flower (tetraploid) 2	199.233
	CNS0095615	Golden flower (tetraploid) 3	127.082
CRA001975	CRR073297	Stem 1	89.928
	CRR073298	Stem 2	94.724
	CRR073299	Stem 3	68.053
	CRR073300	Leaf 1	131.365
	CRR073301	Leaf 2	125.498
	CRR073302	Leaf 3	85.485
	CRR073303	Juvenile bud 1	93.017
	CRR073304	Juvenile bud 2	108.067
	CRR073305	Juvenile bud 3	125.471
	CRR073306	Third green 1	203.362
	CRR073307	Third green 2	138.801
	CRR073308	Third green 3	187.288
	CRR073309	Second white 1	98.790
	CRR073310	Second white 2	126.403
	CRR073311	Second white 3	104.681
	CRR073312	Silver flowering 1	48.902
	CRR073313	Silver flowering 2	48.695
	CRR073314	Silver flowering 3	48.827
	CRR073315	Gold flowering 1	12.820
	CRR073316	Gold flowering 2	19.471
	CRR073317	Gold flowering 3	8.385
	CRR073318	Tawny withering 1	20.205
	CRR073319	Tawny withering 2	15.999
	CRR073320	Tawny withering 3	16.672