Gene detail

Detail information of GWHGAAZE024172

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278001.2	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase RCH1 [Vitis vinifera]
COG	YP_004775215.1	5E-63	RHS repeat-associated core domain-containing protein
Swissprot	tr\|C0LGV1\|RCH1_ARATH	0	LRR receptor-like serine/threonine-protein kinase RCH1 (Precursor)
trEMBL	tr\|F6GZV3\|F6GZV3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46110.1}
TAIR10	AT3G24240.1	0	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	36616761	36620542	-
GWHAAZE00000007	mRNA	36616761	36620542	-
GWHAAZE00000007	exon	36616761	36617209	-
GWHAAZE00000007	exon	36617734	36620542	-
GWHAAZE00000007	CDS	36617734	36620542	-
GWHAAZE00000007	CDS	36616761	36617209	-

Transcript Sequence
>GWHTAAZE024206 ATGTCAGGCAGAGCAATTACAATATTATTCCTGTTGTTTCTCAACATCTCCCTCTTCTCTTCCATCTATGCTTTGAACCAAGAAGGTCTCTCTCTGCTCTCATGGCTATCGACCTTCAACTCTTCTTCTTCTTCAAATTTCTTCACTTCTTGGGATCCAACTCACCAAAATCCATGCAAATGGGCTTACATCAAATGTGGTACCAATGAGTTTGTTTCGGAAATTACAATCAGCTCCCTCAATCTTCCCACCACTTTCCCCACTCAATTCCTCTCCTTCAATTTCCTCACCACCCTCGTCCTTTCCAATGGAAACCTCACCGGAGAAATTCCTCAGGCGATCGGAAACTTGTCGTTTCTGATCACCTTAGACCTCAGTTATAATGCACTAACCGGAAAAATACCACCGGAAATCGGAAAATTATCACAATTACAGATGCTATCATTAAATTCAAATTTCTTCCAAGGTGAAATTCCGGCAGCAATTGGAAACTGCTCGATGCTCCGGCAGCTTGAGTTGTTCGATAATCAGCTCTCCGGGGAAATTCCGGCATCGGTCGGAAAATTGGGGGGTCTAGAAATTTTACGGGCAGGTGGAAACCAGGGAATTTATGGGGAAATCCCAATGCAGATATCGAACTGCAAAAGGCTAGTTTTTCTGGGTCTTGCAGATACAGGAATTTCAGGGCAGATTCCATATAGTTTAGGTGAACTGAAGAATCTAACGACACTTTCGGTTTATACAGCCAATCTCACTGGTGCAATTCCACTGGAGCTCGGTAATTGCTCAGCCTTGGAGAATTTGTTTCTCTATCAGAACCAAATTTCTGGAGAAATTCCCAGGGAATTGGGTTTTCTGAAGAATCTCAAAAGGGTGTTACTGTGGCAGAACAATCTCAGTGGAACTATTCCAGGAGTTCTAGGGAACTGCTCAAGTTTGACAGTAATGGATTTCTCTTTGAATTCCCTGACCGGAGAAATTCCTCAGTTTCTTGAAAATTTAGGTGCAATGGAGGAGCTTCTTTTGTCTGATAACTACATTTCCGGCGAAATTCTGCCGCTTGGAAACTTTTCAAGCTTGAAGCAACTTGAATTGGATAACAACAACATTACTGGTGAGATTCCACCTGCCATTGGAAATTTGAAGGAGCTTTCTCTCTTCTTTGCTTGGCAGAATCAGCTTCATGGCAAAATACCAACTGAGCTAGCAAATTGTTCGAAACTTGAAGCTTTGGATCTTTCACACAATTCCTTAACTGGGTTGGTTCCAAATTCTCTTTTCAACATCAAGAACTTAACCAAATTGTTGTTGATATCGAACAAACTCTCCGGCAGGATTCCACCTGACATTGGAAATTGCACTAGCTTGACCCGCTTACGACTTGGATCCAATATGTTATCTGGTGAAATTCCCTCGTACATTGGGCTACTGCAAAGCTTAACTTTTCTCGAGTTATCGGGAAATCAATTCACTGGGGAGATCCCACGTGAAATCGGCAACTGCACAGAGCTAGAAATGGTTGATCTGCATGAAAATAGGCTCCAAGGCACAATTCCTTCCTCATTTCAATATCTTCTTCAACTTAATGTTTTAGACCTTTCGATGAACAGAATATCAGGCCCCATCCCCGAAGACTTGGGCAAGCTCACATCCTTGAACAAACTTGTATTGAATGGAAACCAAATCAATGGTTTAATTCCTCAATCACTCGGTCAGTGCAAGGATTTGCAGTTCTTGGACATGAGCAGTAACATAATGAGTGGTTCAATCCCAAATGAGATTGGAGACTTGCAAGGATTAGATATTTTGTTGAATTTGAGTTGGAATCTTTTGACGGGACCGGTCCCAGAAATTTTTTCGAAATTTTCCAAGCTCGCAAACTTGGACCTCTCTCACAACAGGCTGATAGGAAACCTAGGAGTTCTCAGTAACCTTGACAATCTTGTTTCGTTGAACGTATCGTACAACAATTTCTCAGGTTTTCTTCCCGACACTAAGTTCTTCCGAGATCTCCCTCCCACTGTTTTCTTAGGAAATCAAAATCTCTGCACCAACAGAAATCAGTGTGGTTCCGGTGGAGAACTCCATGAAAGGAAATCCGCAAGAAATCATATTATCTTTCTTGTACTCGGTATAATTCTAACCACAATAATCTTGACCATTGGAGCAATCTTATTCATCAGGGCTTGTGGTACCACAGTGACCAAAAACGATGAAGAAAATGGCCTAGAGTGGGATTTCACCCCATTTCAAAAGCTAAACTTCACTCCAAATGATATCATATCAAAGATTTCTGATTCTAATATAGTCGGAAAGGGTTCTTCGGGGGTAGTTTATCGAGTTGAAACTCCAATGCAACAGGTTATCGCAGTGAAGAAATTATGGCCTACGAAGAACGGTGATTTCCCACAGAGGGACTTGTTTTCTGCAGAAGTTACAACATTGGGATCAGTAAGGCATAAAAATATAGTGAGGCTATTGGGTTGTTGTAATAATGGAAAAACTAGGCTGCTCTTGTTTGATTATATCAGTAATGGGAGTTTAGCTGGATTACTACATGAGAAGAAGATATACTTGGATTGGGATGCAAGGTACAAAATTATACTTGGAGCTGCTTATGGTTTAGCTTATCTTCACCATGATTGTATTCCTCCAATTGTCCATCGCGATATTAAGGCCAACAACATTTTGGTTGGACCACAATTCGAAGCTTTTCTTGCAGATTTTGGACTAGCTAAGCCAATTTCATCTTCGGGTTGTTCAAGACCTTCCAATGTAGTGGCAGGTTCTTACGGGTATATTGCTCCTGAGTATGGATACAGTTTGAGGATTACAGAGAAGAGCGATGTCTACAGCTTTGGTATAGTGCTACTTGAAGTACTAACAGGGATGGAGCCTGCCGATAGCAAGATTCCAGAGGGAGGTCACATTGTTAGTTGGGTCAACCGGGAATTACGTGAGAAACATAGAGATTTCGTATCCATTCTTGATAAACAATTACTCTTACAGTCGGGCACACAGATACAAGAGATGCTTCAGGTTCTTGGGGTGGCTCTTCTATGTGTGAACCCTGGCCCAGATGAACGGCCCACAATGAAAGATGTGACGGTGATGCTCAAGGAGATTAGGGACGAAAACGAGGATCTTGAAAATCCGAAAAAGATTTTAGGCAAAGGACCGTTGCCTAACCCAAAAGCAGCGGTTCATTGTTCTAGCTTCTCAAGATCATCTGAGCCTTTAATTAGATCTCCATGCTAG

Network for GWHGAAZE024172

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	66	2.50E-05
PF13855.7	LRR_8	96	152	5.30E-08
PF13855.7	LRR_8	288	347	6.20E-07
PF00560.34	LRR_1	407	426	0.042
PF13855.7	LRR_8	503	562	6.10E-10
PF00069.26	Pkinase	767	1035	2.00E-40

Protein Sequence

>GWHPAAZE024190
MSGRAITILFLLFLNISLFSSIYALNQEGLSLLSWLSTFNSSSSSNFFTSWDPTHQNPCKWAYIKCGTNEFVSEITISSLNLPTTFPTQFLSFNFLTTLVLSNGNLTGEIPQAIGNLSFLITLDLSYNALTGKIPPEIGKLSQLQMLSLNSNFFQGEIPAAIGNCSMLRQLELFDNQLSGEIPASVGKLGGLEILRAGGNQGIYGEIPMQISNCKRLVFLGLADTGISGQIPYSLGELKNLTTLSVYTANLTGAIPLELGNCSALENLFLYQNQISGEIPRELGFLKNLKRVLLWQNNLSGTIPGVLGNCSSLTVMDFSLNSLTGEIPQFLENLGAMEELLLSDNYISGEILPLGNFSSLKQLELDNNNITGEIPPAIGNLKELSLFFAWQNQLHGKIPTELANCSKLEALDLSHNSLTGLVPNSLFNIKNLTKLLLISNKLSGRIPPDIGNCTSLTRLRLGSNMLSGEIPSYIGLLQSLTFLELSGNQFTGEIPREIGNCTELEMVDLHENRLQGTIPSSFQYLLQLNVLDLSMNRISGPIPEDLGKLTSLNKLVLNGNQINGLIPQSLGQCKDLQFLDMSSNIMSGSIPNEIGDLQGLDILLNLSWNLLTGPVPEIFSKFSKLANLDLSHNRLIGNLGVLSNLDNLVSLNVSYNNFSGFLPDTKFFRDLPPTVFLGNQNLCTNRNQCGSGGELHERKSARNHIIFLVLGIILTTIILTIGAILFIRACGTTVTKNDEENGLEWDFTPFQKLNFTPNDIISKISDSNIVGKGSSGVVYRVETPMQQVIAVKKLWPTKNGDFPQRDLFSAEVTTLGSVRHKNIVRLLGCCNNGKTRLLLFDYISNGSLAGLLHEKKIYLDWDARYKIILGAAYGLAYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKPISSSGCSRPSNVVAGSYGYIAPEYGYSLRITEKSDVYSFGIVLLEVLTGMEPADSKIPEGGHIVSWVNRELREKHRDFVSILDKQLLLQSGTQIQEMLQVLGVALLCVNPGPDERPTMKDVTVMLKEIRDENEDLENPKKILGKGPLPNPKAAVHCSSFSRSSEPLIRSPC

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.962
	SRR3591706	second leaf	16.068
	SRR3591707	mature leaf	5.822
	SRR3591708	Shoot apex	5.959
	SRR3591709	Stem	5.650
	SRR3591710	White floral bud	14.262
	SRR3591711	White flower	29.606
	SRR3591712	Green floral bud	2.671
	SRR3591713	Yellow flower	16.096
SRP173429	SRR8316895	Juvenile bud stage	0.608
	SRR8316896	Juvenile bud stage	0.507
	SRR8316897	Juvenile bud stage	0.187
	SRR8316894	Third green stage	0.384
	SRR8316900	Third green stage	1.170
	SRR8316901	Third green stage	0.798
	SRR8316898	Complete white stage	3.779
	SRR8316899	Complete white stage	1.560
	SRR8316903	Complete white stage	8.238
	SRR8316902	Silver flowering stage	10.295
	SRR8316904	Silver flowering stage	21.668
	SRR8316905	Silver flowering stage	11.382
	SRR8316906	Gold flowering stage	21.774
	SRR8316907	Gold flowering stage	17.277
	SRR8316908	Gold flowering stage	13.518
SRP132670	SRR6706286	Control	1.721
	SRR6706287	Light intensity 50%	2.106
	SRR6706288	Light intensity 20%	1.697
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.730
	CNS0095593	Slightly white alabastrum(diploid) 2	0.498
	CNS0095594	Slightly white alabastrum(diploid) 3	0.891
	CNS0095595	Whole white alabastrum(diploid) 2	0.664
	CNS0095596	Whole white alabastrum(diploid) 3	0.776
	CNS0095597	Whole white alabastrum(diploid) 4	0.580
	CNS0095598	Silvery flower (diploied) 1	2.967
	CNS0095599	Silvery flower (diploied) 2	4.004
	CNS0095600	Silvery flower (diploied) 3	19.706
	CNS0095601	Golden flower (diploid) 1	2.748
	CNS0095602	Golden flower (diploid) 2	9.077
	CNS0095603	Golden flower (diploid) 3	9.395
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.790
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.425
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.252
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.607
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.475
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.879
	CNS0095610	Silvery flower (tetraploid) 1	20.180
	CNS0095611	Silvery flower (tetraploid) 2	12.179
	CNS0095612	Silvery flower (tetraploid) 3	16.875
	CNS0095613	Golden flower (tetraploid) 1	8.279
	CNS0095614	Golden flower (tetraploid) 2	13.493
	CNS0095615	Golden flower (tetraploid) 3	34.368
CRA001975	CRR073297	Stem 1	1.046
	CRR073298	Stem 2	1.067
	CRR073299	Stem 3	0.691
	CRR073300	Leaf 1	1.042
	CRR073301	Leaf 2	1.283
	CRR073302	Leaf 3	0.836
	CRR073303	Juvenile bud 1	1.283
	CRR073304	Juvenile bud 2	2.698
	CRR073305	Juvenile bud 3	1.820
	CRR073306	Third green 1	9.420
	CRR073307	Third green 2	8.352
	CRR073308	Third green 3	9.405
	CRR073309	Second white 1	4.228
	CRR073310	Second white 2	3.672
	CRR073311	Second white 3	1.751
	CRR073312	Silver flowering 1	1.035
	CRR073313	Silver flowering 2	2.646
	CRR073314	Silver flowering 3	2.032
	CRR073315	Gold flowering 1	2.965
	CRR073316	Gold flowering 2	5.272
	CRR073317	Gold flowering 3	3.304
	CRR073318	Tawny withering 1	0.646
	CRR073319	Tawny withering 2	0.017
	CRR073320	Tawny withering 3	0.693