Gene detail

Detail information of GWHGAAZE024160

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074782.1	0	PREDICTED: alcohol dehydrogenase 1 [Sesamum indicum]
COG	YP_003147226.1	2E-124	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
Swissprot	tr\|P25141\|ADH1_PETHY	0	Alcohol dehydrogenase 1
trEMBL	tr\|Q9M6B5\|Q9M6B5_VITVI	0	Alcohol dehydrogenase 6 {ECO:0000313\|EMBL:AAF44335.1}
TAIR10	AT1G77120.1	3E-148	alcohol dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	36442692	36446574	+
GWHAAZE00000007	mRNA	36442692	36446574	+
GWHAAZE00000007	exon	36442692	36442826	+
GWHAAZE00000007	exon	36443303	36443349	+
GWHAAZE00000007	exon	36443763	36444088	+
GWHAAZE00000007	exon	36444629	36444711	+
GWHAAZE00000007	exon	36444814	36444889	+
GWHAAZE00000007	exon	36445042	36445130	+
GWHAAZE00000007	exon	36445504	36445665	+
GWHAAZE00000007	exon	36446458	36446574	+
GWHAAZE00000007	CDS	36442692	36442826	+
GWHAAZE00000007	CDS	36443303	36443349	+
GWHAAZE00000007	CDS	36443763	36444088	+
GWHAAZE00000007	CDS	36444629	36444711	+
GWHAAZE00000007	CDS	36444814	36444889	+
GWHAAZE00000007	CDS	36445042	36445130	+
GWHAAZE00000007	CDS	36445504	36445665	+
GWHAAZE00000007	CDS	36446458	36446574	+

Transcript Sequence
>GWHTAAZE024194 GCGGTGGCATGGGAAGCAGGGAAGCCACTGGTGATTGATGAAGTGGAGGTTGCACCACCACAAAAAATGGAAGTTCGCGTTAAGATCCTTGTCACGTCCTTGTGCCACACTGATGTCTATTTTTGGGATGCCAAGGGCCAAAATCCCTTGTTTCCTCGCATATTGGGTCATGAAGCTGGAGGAATCGTTGAGAGCGTAGGTGAAGGCGTGACGGAACTTCAACCAGGTGACCATGTCCTCCCAATATTCACCGGGGAATGCAAAGAGTGTCGCCACTGCAAATCCCCGGAGAGCAACATGTGTGACCTTCTAAGGATAAACACTGATAGGGGTGTTATGCTCAGTGACGGGAAATCAAGATTCTCCAAGAATGGACAACCCATTTTCCACTTTCTTGGCACCTCCACCTTTAGCGAGTACACCGTTCTTCATGTCGGATGTCTTGCCAAGATTAACCCGGAGGCTCCACTCGACAAAGTTTGTGTTCTTAGTTGTGGAATATCCACAGGAATGGGTGCAACGTTAAATGTTGCGAAACCTACAAAGGGCTCAACTGTTGCTGTTTTCGGATTGGGAGCCGTAGGCCTTGCTGCTGCTGAAGGGGCTCGGATTGCTGGGGCTTCAAGGATCATTGGTGTTGACCTGAACCCTAGTAGATTTGAATCGGCAAAGATGTTTGGTGTTACGGAATTCGTGAACCCAAAAGATCATAACAAGCCTGTGCAAGAGGTTAGTTCCCCAACATTCTTGAATTTTGGATGGGGTGTTGCTGTACTAGTTGGGGTGCCTAACAAGGATGATGCTTTCAAAACCCATCCGATTAATCTGTTGAATGAGAGGACTCTCAAGGGGACCTTTTTTGGCAACTACAAGCCTCGTACTGACATTCCAGGTGTTGTGGAAAAGTATATGAATAAGGAGCTGGAAGTGGAGAAATTCATCACTCACCAAGTATCTTTCGCTGAAATCAACAAAGCATTTGAGTACATGCTCAAGGGGGAGAGTCTCCGCTGCATCATTCGGATGGACACTTAG

Network for GWHGAAZE024160

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	24	143	1.10E-22
PF00107.27	ADH_zinc_N	193	245	1.90E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18857	ADH1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Fatty acid degradation	map00071
		alpha-Linolenic acid metabolism	map00592
		Tyrosine metabolism	map00350

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008270	molecular_function	zinc ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.233
	SRR3591706	second leaf	0.017
	SRR3591707	mature leaf	0.399
	SRR3591708	Shoot apex	0.143
	SRR3591709	Stem	0.925
	SRR3591710	White floral bud	16.479
	SRR3591711	White flower	6.183
	SRR3591712	Green floral bud	117.799
	SRR3591713	Yellow flower	3.985
SRP173429	SRR8316895	Juvenile bud stage	15.285
	SRR8316896	Juvenile bud stage	63.785
	SRR8316897	Juvenile bud stage	50.755
	SRR8316894	Third green stage	23.321
	SRR8316900	Third green stage	84.563
	SRR8316901	Third green stage	118.150
	SRR8316898	Complete white stage	2.302
	SRR8316899	Complete white stage	0.570
	SRR8316903	Complete white stage	2.829
	SRR8316902	Silver flowering stage	1.591
	SRR8316904	Silver flowering stage	2.608
	SRR8316905	Silver flowering stage	2.095
	SRR8316906	Gold flowering stage	4.255
	SRR8316907	Gold flowering stage	5.761
	SRR8316908	Gold flowering stage	5.798
SRP132670	SRR6706286	Control	56.469
	SRR6706287	Light intensity 50%	54.946
	SRR6706288	Light intensity 20%	53.305
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	67.913
	CNS0095593	Slightly white alabastrum(diploid) 2	41.396
	CNS0095594	Slightly white alabastrum(diploid) 3	78.862
	CNS0095595	Whole white alabastrum(diploid) 2	69.341
	CNS0095596	Whole white alabastrum(diploid) 3	99.743
	CNS0095597	Whole white alabastrum(diploid) 4	67.012
	CNS0095598	Silvery flower (diploied) 1	12.232
	CNS0095599	Silvery flower (diploied) 2	11.306
	CNS0095600	Silvery flower (diploied) 3	20.515
	CNS0095601	Golden flower (diploid) 1	7.742
	CNS0095602	Golden flower (diploid) 2	14.817
	CNS0095603	Golden flower (diploid) 3	16.213
	CNS0095604	Slightly white alabastrum(tetraploid) 1	104.082
	CNS0095605	Slightly white alabastrum(tetraploid) 2	101.220
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.751
	CNS0095607	Whole white alabastrum(tetraploid) 1	134.313
	CNS0095608	Whole white alabastrum(tetraploid) 2	197.600
	CNS0095609	Whole white alabastrum(tetraploid) 3	139.440
	CNS0095610	Silvery flower (tetraploid) 1	14.273
	CNS0095611	Silvery flower (tetraploid) 2	22.098
	CNS0095612	Silvery flower (tetraploid) 3	5.777
	CNS0095613	Golden flower (tetraploid) 1	1.860
	CNS0095614	Golden flower (tetraploid) 2	3.812
	CNS0095615	Golden flower (tetraploid) 3	2.270
CRA001975	CRR073297	Stem 1	30.198
	CRR073298	Stem 2	34.841
	CRR073299	Stem 3	19.172
	CRR073300	Leaf 1	52.234
	CRR073301	Leaf 2	55.471
	CRR073302	Leaf 3	42.178
	CRR073303	Juvenile bud 1	51.894
	CRR073304	Juvenile bud 2	57.934
	CRR073305	Juvenile bud 3	1.308
	CRR073306	Third green 1	9.699
	CRR073307	Third green 2	12.311
	CRR073308	Third green 3	8.686
	CRR073309	Second white 1	12.071
	CRR073310	Second white 2	3.518
	CRR073311	Second white 3	3.707
	CRR073312	Silver flowering 1	9.692
	CRR073313	Silver flowering 2	7.742
	CRR073314	Silver flowering 3	9.358
	CRR073315	Gold flowering 1	8.514
	CRR073316	Gold flowering 2	0.553
	CRR073317	Gold flowering 3	3.328
	CRR073318	Tawny withering 1	9.199
	CRR073319	Tawny withering 2	8.071
	CRR073320	Tawny withering 3	3.721