Gene detail

Detail information of GWHGAAZE024131

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010260451.1	0	PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Nelumbo nucifera]
COG	YP_005885326.1	3E-136	branched-chain alpha-keto acid dehydrogenase complex E1 alpha subunit
Swissprot	tr\|Q84JL2\|ODBA2_ARATH	0	2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (Precursor)
trEMBL	tr\|A0A067L764\|A0A067L764_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP43088.1}
TAIR10	AT5G09300.1	3E-176	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	35693575	35698580	+
GWHAAZE00000007	mRNA	35693575	35698580	+
GWHAAZE00000007	exon	35693575	35693649	+
GWHAAZE00000007	exon	35694801	35694983	+
GWHAAZE00000007	exon	35695876	35696033	+
GWHAAZE00000007	exon	35696148	35696247	+
GWHAAZE00000007	exon	35697002	35697113	+
GWHAAZE00000007	exon	35697563	35697702	+
GWHAAZE00000007	exon	35697830	35698015	+
GWHAAZE00000007	exon	35698413	35698580	+
GWHAAZE00000007	CDS	35693575	35693649	+
GWHAAZE00000007	CDS	35694801	35694983	+
GWHAAZE00000007	CDS	35695876	35696033	+
GWHAAZE00000007	CDS	35696148	35696247	+
GWHAAZE00000007	CDS	35697002	35697113	+
GWHAAZE00000007	CDS	35697563	35697702	+
GWHAAZE00000007	CDS	35697830	35698015	+
GWHAAZE00000007	CDS	35698413	35698580	+

Transcript Sequence
>GWHTAAZE024165 GCCTTGGATTTTCCCGGTGGAAAAGTTCCATTTACTTCTGAAATGAGATTCATTGCCGAGTCGCCTGAAAAGAGGGTGAGCAAGGAAATTGCAGTGAAGATGTATAGTGACATGGTTACCCTTCAAATTATGGACACTATCTTCTATGAGGCACAAAGGCAAGGGAGGCTTTCCTTTTATGTCACTTCCAATGGAGAAGAGGCCATCAACATAGCCTCAGCTGCAGCTCTCAGCCCACATGATGTTATATTGCCTCAGTATCGGGAATCTGGAGTGTTATTATGGCGCGGTTTCACCTTGCAAGAATTCGCACACCAATGCTTTGGAAACAAGAGTGATTATGGGAAAGGGAGGCAAATGCCGATTCATTACGGATCGAATAAGTACAACTACTTCACAGTCTCCTCACCTATAGCTACACAGCTTCCTCAAGCTGTGGGCGTCGCTTATTCTCTCAAGATGGATAAAAAGGATGCTTGCGTTGTCACTTATTTTGGGGATGGCAGCACCAGTGAGGGAGATTTCCATGCCGGTTTAAATTTTGCAGCGGTTACAGAAGCCCCCGTTATTTTTATATGCCGCAACAACGGGTGGGCCATCAGCACTCCTGTATCAGAACAATTTCGAAGTGATGGTATCGTGGTGAAGGGTCAAGCTTACGGAATCCAAAGTATTAGGGTAGACGGAAATGATGCTCTTGCCGTCTATAGTGCAATTCGTGCGGCTCGTGAAATGGCCGTTAGTGAAAAACGACCAGTCTTGATTGAGGCCCTTACATACCGTGTGGGACACCATTCAACATCCGATGATTCAACCAAGTACCGGCCAGTAGATGAAATTGAACACTGGAAAAAAGCGCGAAGCCCTATAGCAAGATATAGAAAATGGGTTGAAAGAAATGGGTGGTGGAGCGACGATGATGAATCTAAACTTCGTGCCAATGTCAGAAAACAGGTAATAGAGGCAATTCAAGTAGCTGAGAAAACAGAGAAACCACCGCTGAAAGATATGTTTAGTGATGTTTATGACAAAATACCCTCCAATCTCCATGAGCAAGAGAGATTCCTTAGAGAAGATGTAAAGAGACACCCACAAGACTACCCCTCGGATGTTCCTTTATAG

Network for GWHGAAZE024131

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00676.21	E1_dh	38	333	2.90E-99

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00166	BCKDHA, bkdA1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280

Gene Ontology

GO term	Ontology	Name
GO:0016624	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	78.184
	SRR3591706	second leaf	16.691
	SRR3591707	mature leaf	20.436
	SRR3591708	Shoot apex	39.068
	SRR3591709	Stem	31.623
	SRR3591710	White floral bud	56.387
	SRR3591711	White flower	45.749
	SRR3591712	Green floral bud	48.479
	SRR3591713	Yellow flower	26.224
SRP173429	SRR8316895	Juvenile bud stage	39.627
	SRR8316896	Juvenile bud stage	53.042
	SRR8316897	Juvenile bud stage	12.712
	SRR8316894	Third green stage	25.663
	SRR8316900	Third green stage	80.461
	SRR8316901	Third green stage	92.351
	SRR8316898	Complete white stage	33.935
	SRR8316899	Complete white stage	121.294
	SRR8316903	Complete white stage	58.154
	SRR8316902	Silver flowering stage	40.422
	SRR8316904	Silver flowering stage	62.502
	SRR8316905	Silver flowering stage	32.933
	SRR8316906	Gold flowering stage	76.643
	SRR8316907	Gold flowering stage	67.744
	SRR8316908	Gold flowering stage	22.280
SRP132670	SRR6706286	Control	85.110
	SRR6706287	Light intensity 50%	85.943
	SRR6706288	Light intensity 20%	88.861
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	82.399
	CNS0095593	Slightly white alabastrum(diploid) 2	101.972
	CNS0095594	Slightly white alabastrum(diploid) 3	86.688
	CNS0095595	Whole white alabastrum(diploid) 2	87.495
	CNS0095596	Whole white alabastrum(diploid) 3	74.518
	CNS0095597	Whole white alabastrum(diploid) 4	82.385
	CNS0095598	Silvery flower (diploied) 1	176.597
	CNS0095599	Silvery flower (diploied) 2	133.085
	CNS0095600	Silvery flower (diploied) 3	179.131
	CNS0095601	Golden flower (diploid) 1	128.310
	CNS0095602	Golden flower (diploid) 2	132.176
	CNS0095603	Golden flower (diploid) 3	133.258
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.888
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.300
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.668
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.587
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.030
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.284
	CNS0095610	Silvery flower (tetraploid) 1	98.878
	CNS0095611	Silvery flower (tetraploid) 2	147.816
	CNS0095612	Silvery flower (tetraploid) 3	79.955
	CNS0095613	Golden flower (tetraploid) 1	79.629
	CNS0095614	Golden flower (tetraploid) 2	75.580
	CNS0095615	Golden flower (tetraploid) 3	96.029
CRA001975	CRR073297	Stem 1	76.030
	CRR073298	Stem 2	71.313
	CRR073299	Stem 3	44.249
	CRR073300	Leaf 1	107.068
	CRR073301	Leaf 2	116.309
	CRR073302	Leaf 3	60.856
	CRR073303	Juvenile bud 1	86.929
	CRR073304	Juvenile bud 2	61.208
	CRR073305	Juvenile bud 3	110.277
	CRR073306	Third green 1	39.122
	CRR073307	Third green 2	42.557
	CRR073308	Third green 3	28.928
	CRR073309	Second white 1	78.170
	CRR073310	Second white 2	78.362
	CRR073311	Second white 3	76.563
	CRR073312	Silver flowering 1	43.309
	CRR073313	Silver flowering 2	52.097
	CRR073314	Silver flowering 3	47.448
	CRR073315	Gold flowering 1	85.003
	CRR073316	Gold flowering 2	85.188
	CRR073317	Gold flowering 3	54.062
	CRR073318	Tawny withering 1	23.037
	CRR073319	Tawny withering 2	29.198
	CRR073320	Tawny withering 3	34.652