Gene detail

Detail information of GWHGAAZE024121

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008219559.1	1.4676E-107	PREDICTED: uncharacterized protein LOC103319748 [Prunus mume]
Swissprot	tr\|Q9SGH2\|MBD9_ARATH	2E-14	Methyl-CpG-binding domain-containing protein 9
trEMBL	tr\|M5Y3J1\|M5Y3J1_PRUPE	1E-99	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26345.1}
TAIR10	AT1G77250.1	4E-24	RING/FYVE/PHD-type zinc finger family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	35190232	35196957	+
GWHAAZE00000007	mRNA	35190232	35196957	+
GWHAAZE00000007	exon	35190232	35190438	+
GWHAAZE00000007	exon	35192195	35192413	+
GWHAAZE00000007	exon	35192962	35193310	+
GWHAAZE00000007	exon	35194627	35194691	+
GWHAAZE00000007	exon	35195788	35196957	+
GWHAAZE00000007	CDS	35190232	35190438	+
GWHAAZE00000007	CDS	35192195	35192413	+
GWHAAZE00000007	CDS	35192962	35193310	+
GWHAAZE00000007	CDS	35194627	35194691	+
GWHAAZE00000007	CDS	35195788	35196957	+

Transcript Sequence
>GWHTAAZE024155 ATGATTAGTAAAGAGTGTGAAAGGAATTGTTATGGTCTAGTGGTTAGGTATTTTGAATCTGAGGGTTTTGTGGCTGGAATTGAGGATGGTGTTGGTGGCACTCGGACGTACAAGAGGCGGAAGCGTAGAAATTTGAGTAGTTTAGAGGCCAAATTGGTTGAAGATAGGATGGTTTCGGTGAATTCAGCTGTTCAACTTATAGATAAGACAAAAGAGGAACCACAGGGCACAGGTTTGAATAATACTTTCTGTGATCAAGTTAGGCTTGCTAGTATGGGTTCACAGCCTTATACAAATGGTTCAAATAATTGCACAGTCAAGTACTGGAGAAATATTGTTCTGGAACAAATGTATCAGTCACCATCTGTAAGTAAAGGTGGTTTACAGGAATGCATCGAGACTGCTCTAGGGTTTTGTCCAGAAAAGGAACCTATTCAATTTGATGAAGAAAGGCATAAATGCTCTTCAAAGAGACATTGGATGCTTAATGGAACCCAAATTGCTGCTAAACGGCATGTGGGTTTAATGCCAAATGGATCAGTGGGTCAATCATATTATCGTAATAACACTGAGCTATGCAAACGTGCTTTCTCAGATATCTTAATGTCTGAAAACTTTACAGAACTGTGCAACCTACTCCTTCAAAATTTCGATGGAGTGAAGGTTGACTGCATCTTTGATGTTAGTACTATAGATTCAAGAATGAAAGAGGGAGCTTATGAGGGTTCTCCAATGCTTTTTCACTCAGATATTCAACGGGTATACACTTGCCACTGCACTGGATTGGTCGCCATTTCAAAGAGCCTTTTGGACAAATCAAGGACTTCTTATAGTCAACAGCAGTTCCCTACTCAAGAATCCACCGCACATTTCAAACCAGATATTTTCACTGCAGCATCTCCCTGTGAGGATTGTGTAGCATGCGAGACGCTTAATCCCCCATCTCAAATACCCATATTTGATGGGATCCGAACCAATGAAGAACCAATCCAAGAATTAGTGACTTCAAATGGGATGACTTTTCCCCATTGCAATATATGCCAGCACGAGGTACTAAATCAAGAGGAGTTGAAAATATGCAGTCATTTTAGCTGTCCTCGCAAGTACTACCACATGAGGTGCATAACAAGTACTCAATTAGAGTCCTATGGGCCTTGTTGGTATTGCCCATCTTGTCTATGCCAAGCTTGCCTCTCCGATCGAGATGATGATAAGATTATTATATGTGATGGCTGTGATAATGCGAACCACATTTATTGTACGCGGCCCCCACTCGGTTCTATTCCTGAGGGGAAATGGTTTTGCACAAAATGTCGTGAGGGAATAAACAACGTACGCAAAACAAGAAGGGCGTATCTGAGAAAGCAAAAAAATTTGAATAAGAAAACCAACGAGAATTTTGTTGGAATCCAAACAAATGAAGAACCGATTGGGGAATTCGAGGAGAATTCGAGTCTCTTGGAGGAAAACGGGTTCCAACTACTGGTATCGGAAGAAATGAATTTGAAATGTTGCTTTATATGCCACCAAGAGCTCGAAAATCACGAGGAGTCAAAAATATGCAGTCATGTTCTTTGTCCCCATAAGTTCTACCATTCAAAGTGCCTAACAAGTATGCAAGTGGAGTCATATGGTCCGTGCTGGTATTGCCCATCTTGTCTATGCAGGGTTTGTCTCGCTGATCGAGACGATGATAAGGTTATCCTATGCGATGACTGTGATCATGGGTACCATATTTATTGCACGCGGCCCCCACTTGGTTCGATTCCTGAGGGGAGATGGTCTTGCCCGAAATGTGTTGAAGCCAAAAGCGAATGCGTACGCAAGCCAAAAAGGACATTCCGAAGAAAGCAAAGGCTGAAAGAGAAAAAAGAAGAGGAGAGAGAAGTTTATGAAAGTCTTCAAACTTTGAAGAAAGATAATGATATTGGTGGGGTGGATTTGCTTCTTGCGGCAGCCAAGACGGTGAATTTGGAGGAGAGTTTGGCTTCGTTGGTGATGGATAGTTGA

Network for GWHGAAZE024121

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.30	PHD	394	440	1.30E-11
PF00628.30	PHD	555	601	7.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.250
	SRR3591706	second leaf	2.787
	SRR3591707	mature leaf	1.963
	SRR3591708	Shoot apex	6.008
	SRR3591709	Stem	3.209
	SRR3591710	White floral bud	1.383
	SRR3591711	White flower	1.713
	SRR3591712	Green floral bud	2.757
	SRR3591713	Yellow flower	0.341
SRP173429	SRR8316895	Juvenile bud stage	5.903
	SRR8316896	Juvenile bud stage	7.416
	SRR8316897	Juvenile bud stage	2.347
	SRR8316894	Third green stage	2.490
	SRR8316900	Third green stage	4.402
	SRR8316901	Third green stage	4.648
	SRR8316898	Complete white stage	1.082
	SRR8316899	Complete white stage	5.392
	SRR8316903	Complete white stage	1.462
	SRR8316902	Silver flowering stage	0.513
	SRR8316904	Silver flowering stage	1.023
	SRR8316905	Silver flowering stage	0.388
	SRR8316906	Gold flowering stage	1.683
	SRR8316907	Gold flowering stage	1.150
	SRR8316908	Gold flowering stage	0.669
SRP132670	SRR6706286	Control	3.171
	SRR6706287	Light intensity 50%	3.551
	SRR6706288	Light intensity 20%	2.960
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.940
	CNS0095593	Slightly white alabastrum(diploid) 2	3.697
	CNS0095594	Slightly white alabastrum(diploid) 3	4.048
	CNS0095595	Whole white alabastrum(diploid) 2	3.073
	CNS0095596	Whole white alabastrum(diploid) 3	3.319
	CNS0095597	Whole white alabastrum(diploid) 4	2.806
	CNS0095598	Silvery flower (diploied) 1	6.202
	CNS0095599	Silvery flower (diploied) 2	3.210
	CNS0095600	Silvery flower (diploied) 3	3.137
	CNS0095601	Golden flower (diploid) 1	5.380
	CNS0095602	Golden flower (diploid) 2	3.354
	CNS0095603	Golden flower (diploid) 3	3.281
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.312
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.642
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.760
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.776
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.280
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.867
	CNS0095610	Silvery flower (tetraploid) 1	1.977
	CNS0095611	Silvery flower (tetraploid) 2	2.588
	CNS0095612	Silvery flower (tetraploid) 3	1.548
	CNS0095613	Golden flower (tetraploid) 1	1.230
	CNS0095614	Golden flower (tetraploid) 2	0.530
	CNS0095615	Golden flower (tetraploid) 3	0.453
CRA001975	CRR073297	Stem 1	5.319
	CRR073298	Stem 2	4.366
	CRR073299	Stem 3	3.269
	CRR073300	Leaf 1	4.067
	CRR073301	Leaf 2	4.912
	CRR073302	Leaf 3	1.425
	CRR073303	Juvenile bud 1	1.488
	CRR073304	Juvenile bud 2	1.766
	CRR073305	Juvenile bud 3	3.012
	CRR073306	Third green 1	0.163
	CRR073307	Third green 2	0.694
	CRR073308	Third green 3	0.118
	CRR073309	Second white 1	0.390
	CRR073310	Second white 2	0.261
	CRR073311	Second white 3	0.238
	CRR073312	Silver flowering 1	0.595
	CRR073313	Silver flowering 2	0.234
	CRR073314	Silver flowering 3	0.272
	CRR073315	Gold flowering 1	3.204
	CRR073316	Gold flowering 2	4.790
	CRR073317	Gold flowering 3	1.643
	CRR073318	Tawny withering 1	3.330
	CRR073319	Tawny withering 2	3.306
	CRR073320	Tawny withering 3	3.014