Gene detail

Detail information of GWHGAAZE023991

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007018993.1	0	Flavonol synthase [Theobroma cacao]
COG	YP_628371.1	2E-27	2OG-Fe(II) oxygenase
Swissprot	tr\|Q07512\|FLS_PETHY	2E-180	Flavonol synthase/flavanone 3-hydroxylase
trEMBL	tr\|A0A061FH54\|A0A061FH54_THECC	0	Flavonol synthase {ECO:0000313\|EMBL:EOY16218.1}
TAIR10	AT5G08640.2	2E-121	flavonol synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	31848354	31851105	-
GWHAAZE00000007	mRNA	31848354	31851105	-
GWHAAZE00000007	exon	31848354	31848566	-
GWHAAZE00000007	exon	31849434	31849761	-
GWHAAZE00000007	exon	31850639	31851105	-
GWHAAZE00000007	CDS	31850639	31851105	-
GWHAAZE00000007	CDS	31849434	31849761	-
GWHAAZE00000007	CDS	31848354	31848566	-

Transcript Sequence
>GWHTAAZE024023 ATGGAGGTAGAGAGAGTGCAACATGTTGCTAGCACTGCCCTAGCCCAAGACACCATACCGCCCGAATTCATCCGGTCTGAGCATGAGCAACCGGGGCTCACCACTTTCCGAGGCAGTGCACCAGACGTGCCGGTCATCGACTTATCGACAAAGGACGAAAAAGAAGTCATAGACACGATAGCGAACGCGGCTCAAAAATGGGGTTTATTTCAAGTTGTGAACCATGAGATACCAAATGATGTTATAGCAAAATTACAAGAGGTTGGGAGGCAATTCTTTGAGCTTCCACAAGAAGAGAAGGAATTGTATGCTAAGCAACCAGGGCAAAATAGTGTTGAAGGGTATGGTACAAAGCTTCAAAAGGAAATTGAAGGGAAGAAAGGTTGGGTTGATCATTTGTTTAATAGGATTGCACCTCCTTCTGCTATTGATTACAAGTTTTGGCCTAAGAATCCACCTAGTTACAGGGAGGCAAATGAGGAGTACGCAAAATACTTGCACAAAGTGGAGGACAAGTTGCTAAGATTGATGTCATTAGGGTTAGGGTTAGAAGGGCATGAGCTTAAGGAAGCAGTGGGTGGTGATAAATTGGAGTACATGATGAAGATAAATTATTACCCGCCATGCCCTCGCCCTGACCTAGCCCTCGGGGTGCCTGCACACACTGACATGTCCGCCCTTACCATTCTTGTCCCCAATGAAGTACAAGGCCTTCAAGTCTTCAATGATGAGCATTGGTATGATGTTAAGTACATACCTAATGCCCTCATCATCCATGTTGGTGATCAATCTGAGATTGTGAGTAATGGAAAGTACAAAAGCGTGTTACACAGAACAACAGTGAACAAAGATAAAGTAAGAATGTCATGGCCGGTGTTCATGGAACCACCGTTAGACCTTGAAGTGGGCCCACACCCCAAGCTTGTCAGTGAGGACAATCCTCCAAAGTACAAGACCAAGAAATTTCGTGACTACGTCTACTGCAAGTTCAACAAGATTCCACAATAA

Network for GWHGAAZE023991

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	43	149	3.20E-24
PF03171.21	2OG-FeII_Oxy	199	296	2.90E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05278	FLS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.328
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.041
	SRR3591708	Shoot apex	0.547
	SRR3591709	Stem	1.373
	SRR3591710	White floral bud	263.855
	SRR3591711	White flower	3.546
	SRR3591712	Green floral bud	270.168
	SRR3591713	Yellow flower	0.232
SRP173429	SRR8316895	Juvenile bud stage	10.032
	SRR8316896	Juvenile bud stage	39.256
	SRR8316897	Juvenile bud stage	15.903
	SRR8316894	Third green stage	27.598
	SRR8316900	Third green stage	193.928
	SRR8316901	Third green stage	170.614
	SRR8316898	Complete white stage	0.125
	SRR8316899	Complete white stage	1.655
	SRR8316903	Complete white stage	0.590
	SRR8316902	Silver flowering stage	1.342
	SRR8316904	Silver flowering stage	3.499
	SRR8316905	Silver flowering stage	1.020
	SRR8316906	Gold flowering stage	1.488
	SRR8316907	Gold flowering stage	0.068
	SRR8316908	Gold flowering stage	0.100
SRP132670	SRR6706286	Control	177.054
	SRR6706287	Light intensity 50%	185.688
	SRR6706288	Light intensity 20%	175.968
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	90.405
	CNS0095593	Slightly white alabastrum(diploid) 2	81.030
	CNS0095594	Slightly white alabastrum(diploid) 3	94.439
	CNS0095595	Whole white alabastrum(diploid) 2	333.487
	CNS0095596	Whole white alabastrum(diploid) 3	378.336
	CNS0095597	Whole white alabastrum(diploid) 4	542.568
	CNS0095598	Silvery flower (diploied) 1	6.985
	CNS0095599	Silvery flower (diploied) 2	25.438
	CNS0095600	Silvery flower (diploied) 3	5.186
	CNS0095601	Golden flower (diploid) 1	3.891
	CNS0095602	Golden flower (diploid) 2	4.091
	CNS0095603	Golden flower (diploid) 3	3.376
	CNS0095604	Slightly white alabastrum(tetraploid) 1	116.349
	CNS0095605	Slightly white alabastrum(tetraploid) 2	122.519
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.131
	CNS0095607	Whole white alabastrum(tetraploid) 1	336.764
	CNS0095608	Whole white alabastrum(tetraploid) 2	441.082
	CNS0095609	Whole white alabastrum(tetraploid) 3	283.571
	CNS0095610	Silvery flower (tetraploid) 1	0.445
	CNS0095611	Silvery flower (tetraploid) 2	5.645
	CNS0095612	Silvery flower (tetraploid) 3	13.702
	CNS0095613	Golden flower (tetraploid) 1	1.104
	CNS0095614	Golden flower (tetraploid) 2	0.451
	CNS0095615	Golden flower (tetraploid) 3	10.645
CRA001975	CRR073297	Stem 1	25.261
	CRR073298	Stem 2	36.990
	CRR073299	Stem 3	33.590
	CRR073300	Leaf 1	152.435
	CRR073301	Leaf 2	93.894
	CRR073302	Leaf 3	63.593
	CRR073303	Juvenile bud 1	89.184
	CRR073304	Juvenile bud 2	70.006
	CRR073305	Juvenile bud 3	6.865
	CRR073306	Third green 1	57.020
	CRR073307	Third green 2	96.675
	CRR073308	Third green 3	60.583
	CRR073309	Second white 1	2.324
	CRR073310	Second white 2	8.140
	CRR073311	Second white 3	7.914
	CRR073312	Silver flowering 1	38.741
	CRR073313	Silver flowering 2	36.911
	CRR073314	Silver flowering 3	28.375
	CRR073315	Gold flowering 1	56.030
	CRR073316	Gold flowering 2	8.793
	CRR073317	Gold flowering 3	15.623
	CRR073318	Tawny withering 1	39.886
	CRR073319	Tawny withering 2	34.233
	CRR073320	Tawny withering 3	37.960