Gene detail

Detail information of GWHGAAZE023973

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009366986.1	5.39498E-75	PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Pyrus x bretschneideri]
Swissprot	tr\|Q7XJS0\|ASHR1_ARATH	9E-60	Histone-lysine N-methyltransferase ASHR1
trEMBL	tr\|E0CRB7\|E0CRB7_VITVI	2E-72	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19071.3}
TAIR10	AT2G17900.1	1E-50	SET domain group 37

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	31188486	31192071	+
GWHAAZE00000007	mRNA	31188486	31192071	+
GWHAAZE00000007	exon	31188486	31188507	+
GWHAAZE00000007	exon	31188621	31188739	+
GWHAAZE00000007	exon	31190936	31191024	+
GWHAAZE00000007	exon	31191305	31191377	+
GWHAAZE00000007	exon	31191507	31191587	+
GWHAAZE00000007	exon	31191988	31192071	+
GWHAAZE00000007	CDS	31188486	31188507	+
GWHAAZE00000007	CDS	31188621	31188739	+
GWHAAZE00000007	CDS	31190936	31191024	+
GWHAAZE00000007	CDS	31191305	31191377	+
GWHAAZE00000007	CDS	31191507	31191587	+
GWHAAZE00000007	CDS	31191988	31192071	+

Transcript Sequence
>GWHTAAZE024005 ATGGTGGAGGCTTTGGTATCTCATATGTCTGAAATCAATGAGAAGCAGTTAGTATTGTATGCACAGATGGCTAGCCTTGTCAGCTTGATACTCCAGTGGCCTGATATCACTATAAAAGAGATTGCAGAAAACTTTTCCAAGCTTGCATGCAATGCCCATACAATTTGTGACACTGAACTGAGACCTCTCGGGACAGGCCTGTATCCTGTCATTTCCATTATCAATCACAGCTGCTTGCCCAATCCGTGCTGGTATTTGAGGGAAGAATGGCAGTGGTTCGTGCTGTGCAAAATATACCAAAAGAGCGCAGGAAGTACAATGACTCGACAGAAAGCTCTCAAAGAACAGTACTACTTCTCTTGCACTTGTCGCTGCATAAAAGTGGGCCAGTATGATGATATTGAAGAAAGTGCAACATTGGAGGGTTACAGGTGCAAAGATAATGAATGCGATGGCTTCTTCGCGTGA

Network for GWHGAAZE023973

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11426	SMYD	Metabolic pathways	map01100
K11426	SMYD	Lysine degradation	map00310

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.255
	SRR3591706	second leaf	0.556
	SRR3591707	mature leaf	0.085
	SRR3591708	Shoot apex	0.886
	SRR3591709	Stem	0.487
	SRR3591710	White floral bud	0.351
	SRR3591711	White flower	0.352
	SRR3591712	Green floral bud	0.613
	SRR3591713	Yellow flower	0.132
SRP173429	SRR8316895	Juvenile bud stage	0.043
	SRR8316896	Juvenile bud stage	0.012
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.098
	SRR8316901	Third green stage	0.019
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.189
	SRR8316903	Complete white stage	0.264
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.385
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.925
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.075
	SRR6706287	Light intensity 50%	0.043
	SRR6706288	Light intensity 20%	0.009
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.147
	CNS0095593	Slightly white alabastrum(diploid) 2	0.438
	CNS0095594	Slightly white alabastrum(diploid) 3	0.635
	CNS0095595	Whole white alabastrum(diploid) 2	0.320
	CNS0095596	Whole white alabastrum(diploid) 3	0.032
	CNS0095597	Whole white alabastrum(diploid) 4	0.078
	CNS0095598	Silvery flower (diploied) 1	0.072
	CNS0095599	Silvery flower (diploied) 2	0.091
	CNS0095600	Silvery flower (diploied) 3	0.156
	CNS0095601	Golden flower (diploid) 1	0.206
	CNS0095602	Golden flower (diploid) 2	0.323
	CNS0095603	Golden flower (diploid) 3	0.026
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.377
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.808
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.735
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.103
	CNS0095610	Silvery flower (tetraploid) 1	0.073
	CNS0095611	Silvery flower (tetraploid) 2	0.993
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.175
	CNS0095614	Golden flower (tetraploid) 2	0.414
	CNS0095615	Golden flower (tetraploid) 3	0.398
CRA001975	CRR073297	Stem 1	0.244
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.041
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.098
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.136
	CRR073306	Third green 1	0.057
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.399
	CRR073314	Silver flowering 3	0.288
	CRR073315	Gold flowering 1	0.007
	CRR073316	Gold flowering 2	0.100
	CRR073317	Gold flowering 3	0.271
	CRR073318	Tawny withering 1	0.002
	CRR073319	Tawny withering 2	0.204
	CRR073320	Tawny withering 3	0.105