Gene detail

Detail information of GWHGAAZE023969

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004250336.1	0	PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2 [Solanum lycopersicum]
COG	YP_004253406.1	2E-36	TIR protein
Swissprot	tr\|Q56YP2\|PI5K1_ARATH	0	Phosphatidylinositol 4-phosphate 5-kinase 1
trEMBL	tr\|K4D6C2\|K4D6C2_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc11g013180.1.1}
TAIR10	AT1G21980.1	0	phosphatidylinositol-4-phosphate 5-kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	31097630	31101657	-
GWHAAZE00000007	mRNA	31097630	31101657	-
GWHAAZE00000007	exon	31097630	31097939	-
GWHAAZE00000007	exon	31098592	31098685	-
GWHAAZE00000007	exon	31098773	31098903	-
GWHAAZE00000007	exon	31098991	31099184	-
GWHAAZE00000007	exon	31099295	31099405	-
GWHAAZE00000007	exon	31099559	31099724	-
GWHAAZE00000007	exon	31099856	31100020	-
GWHAAZE00000007	exon	31100140	31100775	-
GWHAAZE00000007	exon	31101081	31101469	-
GWHAAZE00000007	exon	31101565	31101657	-
GWHAAZE00000007	CDS	31101565	31101657	-
GWHAAZE00000007	CDS	31101081	31101469	-
GWHAAZE00000007	CDS	31100140	31100775	-
GWHAAZE00000007	CDS	31099856	31100020	-
GWHAAZE00000007	CDS	31099559	31099724	-
GWHAAZE00000007	CDS	31099295	31099405	-
GWHAAZE00000007	CDS	31098991	31099184	-
GWHAAZE00000007	CDS	31098773	31098903	-
GWHAAZE00000007	CDS	31098592	31098685	-
GWHAAZE00000007	CDS	31097630	31097939	-

Transcript Sequence
>GWHTAAZE024001 ATGCAAGAATCACAGCCACTAACAATCAATCTCGATGCCTCTTCAACCACAAAGAAGAAGAAACTGGAGTACGACCACGACAACTACGACAGGGACTGCTCGTCGACTGCCACAATCGCCGTCGCGACAACGACAGAGAAGCATTTGCCGAACGGGGATCTATACACCGGAAGTTTCTCGGGTAACGTGCCTCACGGAACAGGGAAGTATTTGTGGGCGGACGGGTGTATGTACGAGGGAGAGTGGAAGAGAGGCAAAGCTTCGGGGAAAGGCAGGTTCTCGTGGCCTTCAGGGGCTACTTTTGAAGGTGAGTTCAAGTCTGGAAGAATGGAGGGGTGTGGCACTTTTATCGGATCCGACGGCGATACGTATAGGGGATCGTGGTCCGGTGACCGGAAACACGGATACGGACAGAAGCATTACCGGAATGGGGATTATTACGAGGGGTCGTGGCGGAGGAATCTGCAGGACGGCCATGGCCGGTATGTATGGAAGAATGGGAATGAGTATGTTGGAGAGTGGAGAAACGGTGTGATCAATGGAAGAGGGGTAATTATTTGGGCGAATGGGAACAGATTCGAAGGACAATGGGAGAATGGTGCACCTAAAGGCCATGGGGTTTTCACTTGGCCCGATGGTAGTTGTTATATCGGAACATGGAACAAGGATAATTGTTACAATGGCGTTAAGCATCAGATTCGGAATAATTTCCCTCCACAACAGGTTCTAAATGGCACCTTTTATCCAGGGAGTAATAACAATGAGAAGGGGGATATTTTTGCTTTCAATCAAAAGCTTTCAGCTCCGTTAATGGATGATAATTTGGTGCCTAAGAAGAGGTCTTCGGTGGATGGGAGGGGCAGCTTGACGGAGAGGAATTTTCCGAGGATTTGTATATGGGAGTCGGATGGAGAGGCTGGTGATATTACGTGTGATATTATTGATACCGTGGAGGCAACTATGCTGTATAGAGAGACTACTTTGTTGGATCAAGATAGAATTAAGCAGTTCCGTAGAAACGGGTGTTGCTTTACAGGGGAAGCGAAGAAGCCAGGGCAAATGATATCCAAAGGCCATAAGCATTACGATTTGATGCTGAATCTTCAGCTGGGTATCAGGTATTCGGTTGGAAAACATGCTTCGATTATACGTGATTTGAAGACGAATGATTTTGATCCGAAAGAGAAGTTCTGGACTAGGTTTCCTTCTGAAGGATCTAAGCTTACACCACCCCATCAATCCGGGGAGTTCCGGTGGAAAGATTACTGTCCAGTGGTGTTTAGGCATTTGAGGGAACTATTTCAAGTAGATCCTGCAGATTACATGCTGGCTATTTGTGGAAATGATGCATTGAGGGAGCTCTCTTCTCCGGGGAAGAGTGGGAGCTTCTTTTATCTCACACAGGACGATAGATTCATGATTAAAACAGTGAAGAAATCAGAAGCAAAGGTCCTAATTAAGATGCTTCCAAGTTACTACCAACATGTTCGTCGCTATGAAAATTCTCTCGTGACGAAATTTTTCGGTATCCACTGTGTCAAGCCAGTGGGTGGCCTAAAGACACGGTTTGTTGTGATGGGCAATTTGTTTTGCTCCGAGTATCGAATTCATCGAAGATTTGACCTCAAAGGATCATCCCATGGCCGCACAACTGATAAACCTGAGGAGGAGATTGATGAAACCACCACCCTTAAGGACCTTGACCTGAACTTTGTGTTTCGGCTTCAACCAAACTGGTACCAAGAACTTATCAAACAAATTGATCGAGATTGTGAGTTCTTGGAAGCTGAAAGGATCATGGATTACAGTCTTTTAGTTGGTCTCCACTTTCGCGATGACAATACGGGCGAAAAAATGGGCTTGTCTCCATTTCTGTTGCGTACTGGAAAGAAGGATACATACCAAAATGAGAAGTTTATGCGTGGTTGTCGCTTCCTTGAAGCCGAGCTACAGGACTTGGATCGTGTTCTATCTGGCAGGAAACCACTGATCAGATTAGGAGCCAATATGCCTGCAAGAGCAGAGCGAGTGGCTCGAAGGAGTGACTTCGATCAGTACACTCCAGGTGGATTTTCCAATTTGACCCCTTCACGCGGCAGTGAAAGCTATGAAGTAGTCTTGTACTTCGGTATCATCGACATCTTACAAGACTACGACATCAGCAAGAAGCTGGAGCACGCCTACAAGTCCTTGCAGGCCGACCCTACGTCGATCTCAGCTGTTGATCCCAAGCTATATTCAAAGAGATTCCGGGATTTCGTTGGGAGAATCTTTGTTGAAGACAGCTGA

Network for GWHGAAZE023969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02493.21	MORN	55	77	1.20E-05
PF02493.21	MORN	78	99	3.80E-07
PF02493.21	MORN	101	123	0.00015
PF02493.21	MORN	124	145	0.011
PF02493.21	MORN	147	168	4.00E-06
PF02493.21	MORN	170	192	6.60E-07
PF02493.21	MORN	193	214	1.60E-07
PF01504.19	PIP5K	448	756	1.80E-97

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00889	PIP5K	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		MAPK signaling pathway - yeast	map04011
		Phosphatidylinositol signaling system	map04070
		Phospholipase D signaling pathway	map04072
		Endocytosis	map04144
		Mitophagy - yeast	map04139
		Focal adhesion	map04510
		Regulation of actin cytoskeleton	map04810
		Fc gamma R-mediated phagocytosis	map04666

Gene Ontology

GO term	Ontology	Name
GO:0046488	biological_process	phosphatidylinositol metabolic process
GO:0016307	molecular_function	phosphatidylinositol phosphate kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016308	molecular_function	1-phosphatidylinositol-4-phosphate 5-kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.708
	SRR3591706	second leaf	11.797
	SRR3591707	mature leaf	11.595
	SRR3591708	Shoot apex	8.112
	SRR3591709	Stem	4.568
	SRR3591710	White floral bud	11.842
	SRR3591711	White flower	12.984
	SRR3591712	Green floral bud	7.055
	SRR3591713	Yellow flower	10.964
SRP173429	SRR8316895	Juvenile bud stage	3.164
	SRR8316896	Juvenile bud stage	5.278
	SRR8316897	Juvenile bud stage	2.377
	SRR8316894	Third green stage	2.324
	SRR8316900	Third green stage	3.787
	SRR8316901	Third green stage	4.317
	SRR8316898	Complete white stage	4.523
	SRR8316899	Complete white stage	6.447
	SRR8316903	Complete white stage	9.477
	SRR8316902	Silver flowering stage	3.094
	SRR8316904	Silver flowering stage	4.330
	SRR8316905	Silver flowering stage	3.115
	SRR8316906	Gold flowering stage	10.364
	SRR8316907	Gold flowering stage	5.984
	SRR8316908	Gold flowering stage	13.143
SRP132670	SRR6706286	Control	5.827
	SRR6706287	Light intensity 50%	6.369
	SRR6706288	Light intensity 20%	6.738
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.948
	CNS0095593	Slightly white alabastrum(diploid) 2	3.954
	CNS0095594	Slightly white alabastrum(diploid) 3	3.084
	CNS0095595	Whole white alabastrum(diploid) 2	2.743
	CNS0095596	Whole white alabastrum(diploid) 3	2.855
	CNS0095597	Whole white alabastrum(diploid) 4	3.754
	CNS0095598	Silvery flower (diploied) 1	3.122
	CNS0095599	Silvery flower (diploied) 2	2.025
	CNS0095600	Silvery flower (diploied) 3	6.307
	CNS0095601	Golden flower (diploid) 1	2.379
	CNS0095602	Golden flower (diploid) 2	6.852
	CNS0095603	Golden flower (diploid) 3	5.790
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.046
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.215
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.294
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.990
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.710
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.118
	CNS0095610	Silvery flower (tetraploid) 1	4.331
	CNS0095611	Silvery flower (tetraploid) 2	3.833
	CNS0095612	Silvery flower (tetraploid) 3	4.487
	CNS0095613	Golden flower (tetraploid) 1	1.856
	CNS0095614	Golden flower (tetraploid) 2	3.929
	CNS0095615	Golden flower (tetraploid) 3	6.847
CRA001975	CRR073297	Stem 1	13.097
	CRR073298	Stem 2	10.183
	CRR073299	Stem 3	11.915
	CRR073300	Leaf 1	7.251
	CRR073301	Leaf 2	7.177
	CRR073302	Leaf 3	5.585
	CRR073303	Juvenile bud 1	6.771
	CRR073304	Juvenile bud 2	6.134
	CRR073305	Juvenile bud 3	9.827
	CRR073306	Third green 1	31.785
	CRR073307	Third green 2	21.425
	CRR073308	Third green 3	26.683
	CRR073309	Second white 1	9.648
	CRR073310	Second white 2	13.362
	CRR073311	Second white 3	9.260
	CRR073312	Silver flowering 1	4.932
	CRR073313	Silver flowering 2	5.501
	CRR073314	Silver flowering 3	4.373
	CRR073315	Gold flowering 1	8.639
	CRR073316	Gold flowering 2	7.950
	CRR073317	Gold flowering 3	4.566
	CRR073318	Tawny withering 1	4.503
	CRR073319	Tawny withering 2	5.029
	CRR073320	Tawny withering 3	5.835