Gene detail

Detail information of GWHGAAZE023870

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096094.1	2.7146E-131	PREDICTED: nuclear cap-binding protein subunit 2 [Sesamum indicum]
COG	YP_008153489.1	1E-12	RNA-binding protein
Swissprot	tr\|Q9XFD1\|NCBP2_ARATH	4E-113	Nuclear cap-binding protein subunit 2
trEMBL	tr\|I3SEA9\|I3SEA9_LOTJA	3E-131	Uncharacterized protein {ECO:0000313\|EMBL:AFK38601.1}
TAIR10	AT5G44200.2	3E-76	CAP-binding protein 20

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	28522325	28532320	+
GWHAAZE00000007	mRNA	28522325	28532320	+
GWHAAZE00000007	exon	28522325	28522440	+
GWHAAZE00000007	exon	28522503	28522620	+
GWHAAZE00000007	exon	28525937	28526160	+
GWHAAZE00000007	exon	28529200	28529338	+
GWHAAZE00000007	exon	28529409	28529511	+
GWHAAZE00000007	exon	28530551	28530667	+
GWHAAZE00000007	exon	28531662	28531718	+
GWHAAZE00000007	exon	28531976	28532082	+
GWHAAZE00000007	exon	28532285	28532320	+
GWHAAZE00000007	CDS	28522325	28522440	+
GWHAAZE00000007	CDS	28522503	28522620	+
GWHAAZE00000007	CDS	28525937	28526160	+
GWHAAZE00000007	CDS	28529200	28529338	+
GWHAAZE00000007	CDS	28529409	28529511	+
GWHAAZE00000007	CDS	28530551	28530667	+
GWHAAZE00000007	CDS	28531662	28531718	+
GWHAAZE00000007	CDS	28531976	28532082	+
GWHAAZE00000007	CDS	28532285	28532320	+

Transcript Sequence
>GWHTAAZE023900 ATGGAATTATCCCTGACTTCCCAGAGGTGGAGGAAGTCGCCGGAGGAGGCGAAGAGGTCGGAGGACTTGCGGAAAGAGGCTGAGGAGTTAGGGTGGAACATGAGCTTGGTGGGAGGAGACGATGTTGATGCGGTTGTTGTATTCCTTGATGAAGCTGCCCATGGCGATTCGGTGGTGGGGACTGCGAGATGTTGTGGAAGAGAAAGCCATAGCGTAAAGAGGGTAAGGGGACTCGATCCAAACAAGATTTCGGCCTATCGGGATAGAAGGTTTCCAGGAACGCAAGAAGAATTCGAACATGCACTCCTTACCTCAATTACGGTTTATGTTGGCAACATGTCCTTCTATACAACAGAGGAGCAGGTTTATGAATTGTTTTCCCGGGCTGGAGAAATTAAAAAGATAGTTATGGGTTTGGACAAGAACTCTAAAACTCCTTGTGGCTTCTGCTTTATCATGTACTACTCAAGAGAAGATGCTGAAGATGCGGTCAAATATATAAGTGGGACTATTCTGGATGATCGTCCAATTCGTGTGGATTTTGATTGGGGATTTCAAGAAGGAAGACAATGGGGCCGTGGTCGAAGTGGTGGACAGGTACGGGATGAATATCGCACTGACTACGATCCTGATATCCTTTTAAAAGTTTCAAATATATTTGTACTCTCTTCTTTGTTCTTCCAATTTGATATGGCTAGTATCATACGTAGAGGTGGCTATGGAAAATTGGTTCAGAGAGAGTTGGAAGCACAAAGACAGTTAGTGGATTATGGTACTGGATCATTGGCTTCTCTCCCTCCTGTTATGGTACCTCAATATGGTAGGCACGGTGGAAACCATGGTCATGGGGGCTCTCATCGACATGGTGGTAGAGATTACCATCGGAAGCGACATCGAGAAGATGACCGGCATGGAATGGACATTTCAAAGAGAACTTCTGACCATGAATCTCGTAGAAACTCTGATCAGGACTCTAGACCGGCTACTTTAGTTGTTAGTAATGGTAATAACTGTTAG

Network for GWHGAAZE023870

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	108	178	3.10E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12883	NCBP2, CBP20	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.783
	SRR3591706	second leaf	19.049
	SRR3591707	mature leaf	16.123
	SRR3591708	Shoot apex	36.290
	SRR3591709	Stem	22.388
	SRR3591710	White floral bud	28.103
	SRR3591711	White flower	29.089
	SRR3591712	Green floral bud	31.285
	SRR3591713	Yellow flower	28.410
SRP173429	SRR8316895	Juvenile bud stage	19.238
	SRR8316896	Juvenile bud stage	23.063
	SRR8316897	Juvenile bud stage	15.109
	SRR8316894	Third green stage	9.449
	SRR8316900	Third green stage	26.516
	SRR8316901	Third green stage	28.413
	SRR8316898	Complete white stage	8.584
	SRR8316899	Complete white stage	34.319
	SRR8316903	Complete white stage	14.357
	SRR8316902	Silver flowering stage	11.056
	SRR8316904	Silver flowering stage	12.187
	SRR8316905	Silver flowering stage	6.194
	SRR8316906	Gold flowering stage	20.085
	SRR8316907	Gold flowering stage	20.122
	SRR8316908	Gold flowering stage	26.251
SRP132670	SRR6706286	Control	31.111
	SRR6706287	Light intensity 50%	28.511
	SRR6706288	Light intensity 20%	30.656
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.267
	CNS0095593	Slightly white alabastrum(diploid) 2	20.847
	CNS0095594	Slightly white alabastrum(diploid) 3	21.219
	CNS0095595	Whole white alabastrum(diploid) 2	19.876
	CNS0095596	Whole white alabastrum(diploid) 3	17.132
	CNS0095597	Whole white alabastrum(diploid) 4	21.060
	CNS0095598	Silvery flower (diploied) 1	25.409
	CNS0095599	Silvery flower (diploied) 2	19.085
	CNS0095600	Silvery flower (diploied) 3	18.656
	CNS0095601	Golden flower (diploid) 1	20.112
	CNS0095602	Golden flower (diploid) 2	18.363
	CNS0095603	Golden flower (diploid) 3	17.909
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.506
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.592
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.063
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.817
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.561
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.742
	CNS0095610	Silvery flower (tetraploid) 1	25.934
	CNS0095611	Silvery flower (tetraploid) 2	20.171
	CNS0095612	Silvery flower (tetraploid) 3	19.454
	CNS0095613	Golden flower (tetraploid) 1	15.406
	CNS0095614	Golden flower (tetraploid) 2	21.314
	CNS0095615	Golden flower (tetraploid) 3	17.010
CRA001975	CRR073297	Stem 1	32.891
	CRR073298	Stem 2	26.476
	CRR073299	Stem 3	27.327
	CRR073300	Leaf 1	28.240
	CRR073301	Leaf 2	29.768
	CRR073302	Leaf 3	25.100
	CRR073303	Juvenile bud 1	26.002
	CRR073304	Juvenile bud 2	17.625
	CRR073305	Juvenile bud 3	24.298
	CRR073306	Third green 1	6.543
	CRR073307	Third green 2	8.263
	CRR073308	Third green 3	8.506
	CRR073309	Second white 1	7.595
	CRR073310	Second white 2	9.114
	CRR073311	Second white 3	9.608
	CRR073312	Silver flowering 1	8.656
	CRR073313	Silver flowering 2	10.716
	CRR073314	Silver flowering 3	9.059
	CRR073315	Gold flowering 1	17.491
	CRR073316	Gold flowering 2	16.795
	CRR073317	Gold flowering 3	11.887
	CRR073318	Tawny withering 1	21.918
	CRR073319	Tawny withering 2	19.328
	CRR073320	Tawny withering 3	23.043