Gene detail

Detail information of GWHGAAZE023861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009780300.1	0	PREDICTED: receptor-like protein kinase HAIKU2 [Nicotiana sylvestris]
COG	YP_004775215.1	1E-49	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	0	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|B9IQE2\|B9IQE2_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP49252.1}
TAIR10	AT1G72180.1	0	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	28381833	28385901	+
GWHAAZE00000007	mRNA	28381833	28385901	+
GWHAAZE00000007	exon	28381833	28384389	+
GWHAAZE00000007	exon	28385531	28385901	+
GWHAAZE00000007	CDS	28381833	28384389	+
GWHAAZE00000007	CDS	28385531	28385901	+

Transcript Sequence
>GWHTAAZE023891 ATGGCCGACCGTGGAAATCTTCTTTCATTCCGAATTTTGACTACTTTCTCGGTTTTCCTTTGCCTTTTCCAACCATCATCTTCACTAATTGAGGAAACCCGCGCGCTCCTTGAATTCAAAACCCAGCTCAACGACCCTTTGAACTACTTAGATTCATGGAAGGATTCGGAGTCCCCGTGCCAGTTTGTGGGAATTTCTTGTCATCGAAACACGGGTCAAGTAATTGGAATTTCGCTTGACAACAAGTCCCTATCGGGTCACATTTCCCCCTCAATTTCTGTTCTTCAAAGCCTTGACTCTCTTGTCCTGCCATCGAATTTGATTTCGGGTAATCTTCCGCCCCAGTTGAGCAATTGCAGCAGTCTTAGAGTTTTGAATGTCACCGGAAACAATTTGAATGGCAGCCTACCGGATCTATCAATGCTGAAGAAGTTAGAGGTTCTTGATTTATCTGGAAACTACTTTTCTGGGGAATTCCCTGTTTGGGCCGCAAAATTGACTGGTTTGGTCTCTTTAGGCCTTGGAGATAATGATTATGAGGAGGGGGAAATTCCCGAGAGTCTTGGGAATCTCAAGAACTTGAATTGGCTTTATCTTGCTGGTTCCAACCTGAAGGGTGGTATACCAGAATCTTTTTCTCAGCTGCAAGAATTGGAAACTTTGGATATTTGCAGGAACAAGATTTCTGGGAACTTTCCAATATGGATAACCAAACTAATAAAGCTCAAGAAAATTGAGCTCTGGCAGAACAGTTTGACCGGTGTGATCCCTCCCGATTTTGCAAAGCTCATCCTTCTAGAAGAATTTGATATCTCCACAAACCAGATGCACGGCGAATTGCCTCCAGATCTCGGCAATCTGAAGAACTTGACAGTTTTCCAGCTGCACAAGAACAATTTCTCAGGAAAACTACCTGCAGGATTTGGAGATTTGCATCACATGAATGGCTTTTCCATTTACCAGAACAGTTTCTCTGGAGAATTCCCAGAAAATTTTGGCAGGTTTTCACCACTGAATAGTTTTGACATATCCGAGAATGAATTCACTGGCGGGTTTCCGAAATTCCTGTGTGTAAGCGGGAAGTTGCAGTATATGCTTGCTCTGGACAACAATTTCTCTGGGGAATTAGCAGAATCTTATGCTGACTGTAAGTCTTTAGTGAGGTTGAGGATCAATCAGAACCAACTTTCCGGGAAAATCCCAGATGGGCTGTGGGCCCTACCTTATGCAGAACTAATAGATTTTAGTGACAACGATTTTAGCGGAGAGATAGCTCAAAGTATTGGGTTATCCACCAGCTTGAATCAATTGGTATTGTTTAACAACAGGTTCTCGGGCGAGCTTCCAACAGAGCTTTCCAAACTCGTTCACCTCGAAAGGCTGCACATGGGTAACAACGATTTCTCCGGCAAAATTCCATCTGAAATCTGCGCTCTAAAGCAGTTAACGTATTTGCATTTGGAGAATAACTCATTTACGGGTTCAATACCAGCGGAGATAGGTCAATGTGCTAGGCTTGTGGACTTGGATCTTGCTTTTAATTCTCTTAGTGGTAGTATACCCAATACTTTTTCAGAGACGAGCTCTTTGAACTCGTTGAATCTTTCAAGAAACAAACTTATGGGTTCCATTCCTAGTAGTTTACAGAAATTGAAGCTAAGTTCCATTGATTTGTCCAACAATTTTCTGTCGGGTAGAGTTCCATCTGATCTCTTGACCATGGGAGGGGAGCGAGCATTTGTTGGAAACAAGGGAATTTGTGTCAGCGAAAATTCAAAAACGGACGCGAATATGTTGAATGTTTGCGAAGAAAAGAATGCTCACGAAAGGTTTATGAAACATAAAGTAGTAATGTTTTGCATAATATTATCTGCCTTGATTATAATCCTATCCGGGTTATTGCTCGTGAGCTATCGGAACTTCAAGCACGGCGAGCCTTACACAGAAAACAGCCTGTTTGGGAAGAAAGAATCCGATCCCAAATGGAAACTCGAGTGTTTCCACCACGTGGAATTTGATGCGGACGAGTTATATGATTTGGATAAGGAGAATTTGATAGGAAGTGGAGGTACGGGAAATGTTTATCGGCTTGATTTAAAGAAAGGAGGTGGGACAGTAGCAGTAAAGCAATTATGCAAGGGGAATGGGGTAAAGGTTTTAACAGCAGAAATGGGAATTTTGGGGAGCATTAGGCATAGGAATGTACTAAAGCTTTATGCATGTCTAATGAAGGGAGGGTCGAGTTTTCTGGTGTTCGAGTACATGGAAAATGGGAATCTTTTTGAGGCGCTGCACCGGGAAATCAAGGGTGGAAGGCCGGAATTGGATTGGAATCAGAGGTACAGGATTGCACTTGGAGCTGCCAAAGGAATAGCGTATTTGCATCATGATTGTTCACCGGCCATTATTCATAGAGATATTAAGTCGATGAATATTTTGCTTGACGAGGATTATGAACCAAAAATTGCTGATTTTGGGATCGCCAAGGTTGTCGAGGTGTCTCCTAATGGATCTGAATCTGGCAGTTTTGCTGGCACTCATGGTTACATTGCTCCCGAGCTGGCCTATACTCTCAAGGTGACTGAAAAGAGTGATGTGTATAGTTTTGGAGTGGTACTACTAGAACTGGTGACCGGTAGAAGAGCGATAGAGGAAGAAGCCTATGGAGAAGGGAAAGATATCGTTTATTGGGTCTCTTCTCATCTCAATGACCGCCAAAACATTCTCAAAGTACTCGATCCTAAGTTGGCATCCGACCCCGTCCAAGACGACATGATGAAGGTTTTAAAGTTGGCTACACTTTGCACCACTAAGCTTCCGAATTTGCGCCCATCAATGAGAGATGTGGTCAAGATGCTTGTTGATGCCGAGCCTTGCACTTTCAGATCGTTGGATACCCGTGACAAGAATGCCAAGGTTTTCCTCTAG

Network for GWHGAAZE023861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	31	67	7.00E-10
PF13855.7	LRR_8	217	275	9.70E-07
PF00069.26	Pkinase	682	951	1.70E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.087
	SRR3591706	second leaf	22.357
	SRR3591707	mature leaf	26.130
	SRR3591708	Shoot apex	22.985
	SRR3591709	Stem	30.510
	SRR3591710	White floral bud	21.752
	SRR3591711	White flower	24.305
	SRR3591712	Green floral bud	19.854
	SRR3591713	Yellow flower	1.420
SRP173429	SRR8316895	Juvenile bud stage	21.344
	SRR8316896	Juvenile bud stage	20.293
	SRR8316897	Juvenile bud stage	10.566
	SRR8316894	Third green stage	7.928
	SRR8316900	Third green stage	16.365
	SRR8316901	Third green stage	18.148
	SRR8316898	Complete white stage	2.426
	SRR8316899	Complete white stage	30.124
	SRR8316903	Complete white stage	7.319
	SRR8316902	Silver flowering stage	6.772
	SRR8316904	Silver flowering stage	7.867
	SRR8316905	Silver flowering stage	4.281
	SRR8316906	Gold flowering stage	17.011
	SRR8316907	Gold flowering stage	12.508
	SRR8316908	Gold flowering stage	15.984
SRP132670	SRR6706286	Control	17.756
	SRR6706287	Light intensity 50%	16.806
	SRR6706288	Light intensity 20%	20.574
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.636
	CNS0095593	Slightly white alabastrum(diploid) 2	8.703
	CNS0095594	Slightly white alabastrum(diploid) 3	8.239
	CNS0095595	Whole white alabastrum(diploid) 2	9.954
	CNS0095596	Whole white alabastrum(diploid) 3	4.401
	CNS0095597	Whole white alabastrum(diploid) 4	6.919
	CNS0095598	Silvery flower (diploied) 1	21.738
	CNS0095599	Silvery flower (diploied) 2	20.063
	CNS0095600	Silvery flower (diploied) 3	17.029
	CNS0095601	Golden flower (diploid) 1	20.613
	CNS0095602	Golden flower (diploid) 2	20.415
	CNS0095603	Golden flower (diploid) 3	19.801
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.467
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.985
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.452
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.609
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.957
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.234
	CNS0095610	Silvery flower (tetraploid) 1	5.419
	CNS0095611	Silvery flower (tetraploid) 2	11.283
	CNS0095612	Silvery flower (tetraploid) 3	7.165
	CNS0095613	Golden flower (tetraploid) 1	1.166
	CNS0095614	Golden flower (tetraploid) 2	3.298
	CNS0095615	Golden flower (tetraploid) 3	0.830
CRA001975	CRR073297	Stem 1	25.836
	CRR073298	Stem 2	21.633
	CRR073299	Stem 3	24.979
	CRR073300	Leaf 1	20.131
	CRR073301	Leaf 2	16.640
	CRR073302	Leaf 3	15.701
	CRR073303	Juvenile bud 1	11.671
	CRR073304	Juvenile bud 2	13.592
	CRR073305	Juvenile bud 3	13.579
	CRR073306	Third green 1	7.060
	CRR073307	Third green 2	2.240
	CRR073308	Third green 3	3.019
	CRR073309	Second white 1	8.504
	CRR073310	Second white 2	6.368
	CRR073311	Second white 3	4.719
	CRR073312	Silver flowering 1	1.447
	CRR073313	Silver flowering 2	1.064
	CRR073314	Silver flowering 3	0.772
	CRR073315	Gold flowering 1	27.262
	CRR073316	Gold flowering 2	38.928
	CRR073317	Gold flowering 3	30.254
	CRR073318	Tawny withering 1	17.244
	CRR073319	Tawny withering 2	10.502
	CRR073320	Tawny withering 3	18.088