Gene detail

Detail information of GWHGAAZE023810

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU20352.1	0	hypothetical protein MIMGU_mgv1a005410mg [Erythranthe guttata]
COG	YP_007093680.1	6E-155	UDP-sulfoquinovose synthase
Swissprot	tr\|Q84KI6\|SQD1_SPIOL	0	UDP-sulfoquinovose synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A022PVC6\|A0A022PVC6_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU20352.1}
TAIR10	AT4G33030.1	3E-150	sulfoquinovosyldiacylglycerol 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	26801038	26802902	-
GWHAAZE00000007	mRNA	26801038	26802902	-
GWHAAZE00000007	exon	26801038	26801439	-
GWHAAZE00000007	exon	26802438	26802902	-
GWHAAZE00000007	CDS	26802438	26802902	-
GWHAAZE00000007	CDS	26801038	26801439	-

Transcript Sequence
>GWHTAAZE023840 ATGATCGATCGGTCAAGAGCAGTATACACCCAACACAACAATGTCATAGGAACACTTAACGTTCTCTTTGCTATAAAGGAGTTTAGAGAGGAGTGTCATCTAGTGAAACTCGGGACCATGGGAGAATATGGAACCCCAAATATAGATATCGAAGAGGGTTATATAACGATCAATCATAATGGGAGAACCGATACTTTGCCTTATCCAAAACAAGCGAGCTCATTCTATCATTTGAGTAAGGTCCATGATTCGAATAATATAGCCTTTACTTGTAAGGCTTGGGGTGTAAGAGCCACTGATTTAAACCAAGGGGTGGTTTATGGGGTAAGGACCGATGAGACTGAGATGCATGAAGAGCTTTATAATAGGTTTGATTATGATGGAGTTTTTGGAACTGCATTGAATCGGTTTTGTGTTCAGGCTGCTGTTGGTCATCCACTCACCGTCTACGGCAAAGGTGGTCAGACTAGAGGATACCTAGACATCCGAGACACAGTCCAATGCGTCGAGCTTGCGATAGCAAACCCAGCACAACGCGGGGAATTCCGGGTCTTCAATCAATTCACCGAGCAATTTTCTGTTAATGAACTCGCCTCCCTTGTCACAAAGGCAGGGACCATGCTCGGCCTCCAAGTGAAAACCATATCAGTCCCAAACCCAAGAGTAGAAGCAGAGGAACATTACTACAACGCAAAGCACACCAAACTCATTGAGTTGGGATTGAAACCACACATTCTTTCGGACTCTCTCATTGATTCACTTCTCAACTTTGCTATCAAATTCGAGGACCGGGTTGACAAGAAGCAGATAATGCCCAGCGTTTCTTGGAGGAAAATCGGGGTCAAGCCAAAGACAGTTCCAGCATAG

Network for GWHGAAZE023810

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01370.22	Epimerase	6	186	6.70E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06118	SQD1, sqdB	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		Glycerolipid metabolism	map00561

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0050662	molecular_function	coenzyme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.834
	SRR3591706	second leaf	29.600
	SRR3591707	mature leaf	39.591
	SRR3591708	Shoot apex	29.425
	SRR3591709	Stem	17.159
	SRR3591710	White floral bud	43.449
	SRR3591711	White flower	54.814
	SRR3591712	Green floral bud	50.713
	SRR3591713	Yellow flower	77.403
SRP173429	SRR8316895	Juvenile bud stage	12.682
	SRR8316896	Juvenile bud stage	16.336
	SRR8316897	Juvenile bud stage	14.529
	SRR8316894	Third green stage	11.064
	SRR8316900	Third green stage	38.442
	SRR8316901	Third green stage	27.310
	SRR8316898	Complete white stage	16.367
	SRR8316899	Complete white stage	39.464
	SRR8316903	Complete white stage	24.256
	SRR8316902	Silver flowering stage	23.788
	SRR8316904	Silver flowering stage	32.964
	SRR8316905	Silver flowering stage	19.914
	SRR8316906	Gold flowering stage	31.568
	SRR8316907	Gold flowering stage	52.395
	SRR8316908	Gold flowering stage	50.778
SRP132670	SRR6706286	Control	32.348
	SRR6706287	Light intensity 50%	34.029
	SRR6706288	Light intensity 20%	35.926
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.564
	CNS0095593	Slightly white alabastrum(diploid) 2	16.759
	CNS0095594	Slightly white alabastrum(diploid) 3	13.383
	CNS0095595	Whole white alabastrum(diploid) 2	14.262
	CNS0095596	Whole white alabastrum(diploid) 3	17.436
	CNS0095597	Whole white alabastrum(diploid) 4	14.103
	CNS0095598	Silvery flower (diploied) 1	26.561
	CNS0095599	Silvery flower (diploied) 2	25.723
	CNS0095600	Silvery flower (diploied) 3	37.722
	CNS0095601	Golden flower (diploid) 1	24.203
	CNS0095602	Golden flower (diploid) 2	31.515
	CNS0095603	Golden flower (diploid) 3	32.979
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.881
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.690
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.683
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.984
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.354
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.199
	CNS0095610	Silvery flower (tetraploid) 1	51.072
	CNS0095611	Silvery flower (tetraploid) 2	74.226
	CNS0095612	Silvery flower (tetraploid) 3	59.703
	CNS0095613	Golden flower (tetraploid) 1	31.522
	CNS0095614	Golden flower (tetraploid) 2	43.949
	CNS0095615	Golden flower (tetraploid) 3	37.861
CRA001975	CRR073297	Stem 1	22.172
	CRR073298	Stem 2	20.620
	CRR073299	Stem 3	26.596
	CRR073300	Leaf 1	25.492
	CRR073301	Leaf 2	25.300
	CRR073302	Leaf 3	27.010
	CRR073303	Juvenile bud 1	31.924
	CRR073304	Juvenile bud 2	30.193
	CRR073305	Juvenile bud 3	34.348
	CRR073306	Third green 1	22.088
	CRR073307	Third green 2	16.735
	CRR073308	Third green 3	21.419
	CRR073309	Second white 1	35.253
	CRR073310	Second white 2	26.505
	CRR073311	Second white 3	18.077
	CRR073312	Silver flowering 1	13.121
	CRR073313	Silver flowering 2	14.468
	CRR073314	Silver flowering 3	13.060
	CRR073315	Gold flowering 1	49.322
	CRR073316	Gold flowering 2	57.684
	CRR073317	Gold flowering 3	51.380
	CRR073318	Tawny withering 1	14.626
	CRR073319	Tawny withering 2	15.126
	CRR073320	Tawny withering 3	14.559