Gene detail

Detail information of GWHGAAZE023644

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAL67993.1	0	fiddlehead-like protein [Gossypium hirsutum]
COG	NP_285649.1	5E-16	chalcone synthase
Swissprot	tr\|Q9LLE8\|KCS10_ARATH	0	3-ketoacyl-CoA synthase 10
trEMBL	tr\|Q8VWP9\|Q8VWP9_GOSHI	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT2G26250.1	0	3-ketoacyl-CoA synthase 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	20622997	20631531	-
GWHAAZE00000007	mRNA	20622997	20631531	-
GWHAAZE00000007	exon	20631112	20631531	-
GWHAAZE00000007	exon	20623867	20624492	-
GWHAAZE00000007	exon	20622997	20623534	-
GWHAAZE00000007	CDS	20631112	20631531	-
GWHAAZE00000007	CDS	20623867	20624492	-
GWHAAZE00000007	CDS	20622997	20623534	-

Transcript Sequence
>GWHTAAZE023674 ATGCAAAAACCAAAAGGTAATATGGCCGGAGAACAAGACCTCCTTTCGACCGAGATTGTTAACCGCGGGGTCGAGTCAGGATCCATGACATTCTCGGTGAGGGTGAGGCGGAGGCTGCCGGACTTCGTGCAGTCTGTGAATTTGAAGTATGTTAAGTTGGGGTATCATTATTTGATAAACCACGGGATTTATTTGGCGACTGTGCCGGTGCTGGTACTCGTGTTTAGCGCTGAAGTCGGAAATCTTAGCAGGGAGGAGCTTTGGAGGAAAGTATGGGACAGTACCGCGAAATACGATCTCGCTACTGTTCTTGCTTTCTTTGGCGTGTTTGTTTTTACGCTCTCGGTTTATTTCATGTCTCGGCCTCGCTCGATTTATCTCCTTGATTTTGCATGCTACAAAGCTCACGACGATCTCAAGGTGTCAAAGGAGCAATTCATCGATCATGCAAGAAGATCAGGCAAATTCGACGAGTCCAGCCTCGAATTCCAGAAAAAAATGCTCGAATCATCTGGCATTGGCGACGAAAGCTACGTGCCCAAAGCGATAATGGCATCCGAAAACTGCTGCACGATGAAAGAAGGGAGAGCAGAAGCATCGATGGTGATGTTTGGAGCACTAGACGAACTTTTTGAAAAAACTCGAATCAGGCCCAAAGACGTAGGAGTACTTGTTGTCAACTGCAGCATATTCAATCCCACTCCGTCCTTGTCCGCGATGATAATAAACCACTACAAGATGAGGGGAAATATTCTGAGTTTTAACTTGGGAGGAATGGGTTGTAGCGCGGGGATCATAGCGTTGGATCTGGCGAGGGATATGTTGCGGGCGAATCCAAACAATTATGCAGTGGTTGTGAGTACTGAGATGGTTGGGTATAACTGGTATCCAGGGCGGGATAGGTCTATGCTTATTCCGAATTGCTTCTTTCGTATTGGGTGTTCGGCTGTTCTTCTATCTAATCGTCGACGTGATCATCACCGTGCTAAGTATCGGCTCGAACATATCGTTCGTACTCATAAAGGGGCTGATGATCGCAGCTTTAGGAGCGTGTACCAAGAGGAAGACGAGCAACGGTTCAAGGGGCTAAGGATCAGCAAAGACCTAGTCGAAATAGGAGGAGACGCGCTCAAGACCAACATCACCACACTCGGTCCCTTAGTCCTCCCCTTGTCTGAGCAGCTTCTCTTCTTCTCCACCCTCGTCAAGCGCCACTTATTTGGCGGCCCCACCACTGGACCACAACAAAGGCCACTAGTGAAGCCCTACATCCCCGACTACAAGCTCGCGTTTGAGCACTTGTGTGTGCACGCAGCCAGCAAGACCGTTCTGGATGAGCTGCAGAGGAATTTGGAGCTTAGTGATGAGAACATGGAACCCTCAAGAATGACTCTTAAACGCTTCGGCAACACCTCTAGTAGCAGCATTTGGTACGAGCTCGCTTACTTGGAAGCCATGGATAGGATCAAGAGAGGGGACCGCGTTTGGCAGCTCTCGTTTGGGTCCGGGTTTAAGTGTAACAGCGCGGTTTGGAGGTCAATTCGTCGCATTAAAAAGCCTTCTGCTAACAATCCTTGGCTTTGA

Network for GWHGAAZE023644

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	117	405	2.00E-129
PF08541.11	ACP_syn_III_C	432	512	4.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.770
	SRR3591706	second leaf	309.064
	SRR3591707	mature leaf	155.110
	SRR3591708	Shoot apex	192.370
	SRR3591709	Stem	12.809
	SRR3591710	White floral bud	377.284
	SRR3591711	White flower	111.587
	SRR3591712	Green floral bud	645.132
	SRR3591713	Yellow flower	24.040
SRP173429	SRR8316895	Juvenile bud stage	232.790
	SRR8316896	Juvenile bud stage	327.528
	SRR8316897	Juvenile bud stage	113.401
	SRR8316894	Third green stage	147.544
	SRR8316900	Third green stage	624.733
	SRR8316901	Third green stage	551.357
	SRR8316898	Complete white stage	204.565
	SRR8316899	Complete white stage	646.237
	SRR8316903	Complete white stage	300.839
	SRR8316902	Silver flowering stage	186.936
	SRR8316904	Silver flowering stage	263.595
	SRR8316905	Silver flowering stage	128.475
	SRR8316906	Gold flowering stage	340.021
	SRR8316907	Gold flowering stage	374.649
	SRR8316908	Gold flowering stage	258.120
SRP132670	SRR6706286	Control	1179.070
	SRR6706287	Light intensity 50%	1197.466
	SRR6706288	Light intensity 20%	1273.971
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	166.911
	CNS0095593	Slightly white alabastrum(diploid) 2	147.452
	CNS0095594	Slightly white alabastrum(diploid) 3	212.633
	CNS0095595	Whole white alabastrum(diploid) 2	141.512
	CNS0095596	Whole white alabastrum(diploid) 3	130.781
	CNS0095597	Whole white alabastrum(diploid) 4	162.626
	CNS0095598	Silvery flower (diploied) 1	215.480
	CNS0095599	Silvery flower (diploied) 2	123.373
	CNS0095600	Silvery flower (diploied) 3	314.390
	CNS0095601	Golden flower (diploid) 1	115.436
	CNS0095602	Golden flower (diploid) 2	158.927
	CNS0095603	Golden flower (diploid) 3	146.129
	CNS0095604	Slightly white alabastrum(tetraploid) 1	243.047
	CNS0095605	Slightly white alabastrum(tetraploid) 2	182.436
	CNS0095606	Slightly white alabastrum(tetraploid) 3	717.833
	CNS0095607	Whole white alabastrum(tetraploid) 1	113.733
	CNS0095608	Whole white alabastrum(tetraploid) 2	108.869
	CNS0095609	Whole white alabastrum(tetraploid) 3	741.037
	CNS0095610	Silvery flower (tetraploid) 1	214.064
	CNS0095611	Silvery flower (tetraploid) 2	132.873
	CNS0095612	Silvery flower (tetraploid) 3	153.182
	CNS0095613	Golden flower (tetraploid) 1	107.075
	CNS0095614	Golden flower (tetraploid) 2	108.782
	CNS0095615	Golden flower (tetraploid) 3	158.645
CRA001975	CRR073297	Stem 1	757.543
	CRR073298	Stem 2	780.620
	CRR073299	Stem 3	816.863
	CRR073300	Leaf 1	1297.857
	CRR073301	Leaf 2	1188.064
	CRR073302	Leaf 3	1400.927
	CRR073303	Juvenile bud 1	1189.561
	CRR073304	Juvenile bud 2	1979.163
	CRR073305	Juvenile bud 3	1377.608
	CRR073306	Third green 1	911.097
	CRR073307	Third green 2	538.410
	CRR073308	Third green 3	737.268
	CRR073309	Second white 1	238.736
	CRR073310	Second white 2	176.643
	CRR073311	Second white 3	176.324
	CRR073312	Silver flowering 1	98.115
	CRR073313	Silver flowering 2	80.779
	CRR073314	Silver flowering 3	63.755
	CRR073315	Gold flowering 1	580.880
	CRR073316	Gold flowering 2	499.221
	CRR073317	Gold flowering 3	677.841
	CRR073318	Tawny withering 1	18.080
	CRR073319	Tawny withering 2	16.546
	CRR073320	Tawny withering 3	23.200