Detail information of GWHGAAZE023612


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP08441.10unnamed protein product [Coffea canephora]
COGYP_003881454.11E-55phospholipase C 4
Swissprottr|O81020|NPC2_ARATH0Non-specific phospholipase C2 (Precursor)
trEMBLtr|A0A068UIX9|A0A068UIX9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_33 {ECO:0000313|EMBL:CDP08441.1}
TAIR10AT2G26870.10non-specific phospholipase C2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene1720643117212566-
GWHAAZE00000007mRNA1720643117212566-
GWHAAZE00000007exon1721198617212566-
GWHAAZE00000007exon1721131317211574-
GWHAAZE00000007exon1721100117211235-
GWHAAZE00000007exon1720918217209361-
GWHAAZE00000007exon1720643117206870-
GWHAAZE00000007CDS1721198617212566-
GWHAAZE00000007CDS1721131317211574-
GWHAAZE00000007CDS1721100117211235-
GWHAAZE00000007CDS1720918217209361-
GWHAAZE00000007CDS1720656017206870-
GWHAAZE00000007three_prime_UTR1720643117206559-
Transcript Sequence

Network for GWHGAAZE023612

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04185.15Phosphoesterase313892.70E-105
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01114plc Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Inositol phosphate metabolismmap00562
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Quorum sensingmap02024
Thyroid hormone signaling pathwaymap04919

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.896
SRR3591706second leaf3.546
SRR3591707mature leaf1.147
SRR3591708Shoot apex6.548
SRR3591709Stem10.930
SRR3591710White floral bud2.878
SRR3591711White flower2.709
SRR3591712Green floral bud3.507
SRR3591713Yellow flower1.252
SRP173429 SRR8316895Juvenile bud stage 1.467
SRR8316896Juvenile bud stage 1.427
SRR8316897Juvenile bud stage 0.973
SRR8316894Third green stage 1.194
SRR8316900Third green stage 2.656
SRR8316901Third green stage 2.009
SRR8316898Complete white stage 1.066
SRR8316899Complete white stage 2.803
SRR8316903Complete white stage 1.266
SRR8316902Silver flowering stage0.119
SRR8316904Silver flowering stage0.243
SRR8316905Silver flowering stage0.177
SRR8316906Gold flowering stage 0.640
SRR8316907Gold flowering stage 0.138
SRR8316908Gold flowering stage 1.671
SRP132670SRR6706286Control2.892
SRR6706287Light intensity 50%4.537
SRR6706288Light intensity 20%4.256
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.031
CNS0095593Slightly white alabastrum(diploid) 24.357
CNS0095594Slightly white alabastrum(diploid) 32.741
CNS0095595Whole white alabastrum(diploid) 22.616
CNS0095596Whole white alabastrum(diploid) 33.089
CNS0095597Whole white alabastrum(diploid) 42.135
CNS0095598Silvery flower (diploied) 13.955
CNS0095599Silvery flower (diploied) 24.872
CNS0095600Silvery flower (diploied) 31.669
CNS0095601Golden flower (diploid) 15.709
CNS0095602Golden flower (diploid) 24.130
CNS0095603Golden flower (diploid) 34.006
CNS0095604Slightly white alabastrum(tetraploid) 15.225
CNS0095605Slightly white alabastrum(tetraploid) 24.062
CNS0095606Slightly white alabastrum(tetraploid) 38.489
CNS0095607Whole white alabastrum(tetraploid) 13.043
CNS0095608Whole white alabastrum(tetraploid) 22.406
CNS0095609Whole white alabastrum(tetraploid) 32.742
CNS0095610Silvery flower (tetraploid) 10.663
CNS0095611Silvery flower (tetraploid) 22.272
CNS0095612Silvery flower (tetraploid) 31.534
CNS0095613Golden flower (tetraploid) 11.452
CNS0095614Golden flower (tetraploid) 21.104
CNS0095615Golden flower (tetraploid) 30.386
CRA001975CRR073297Stem 17.121
CRR073298Stem 28.161
CRR073299Stem 310.915
CRR073300Leaf 113.642
CRR073301Leaf 216.227
CRR073302Leaf 311.614
CRR073303Juvenile bud 111.430
CRR073304Juvenile bud 28.606
CRR073305Juvenile bud 313.608
CRR073306Third green 10.618
CRR073307Third green 20.566
CRR073308Third green 30.801
CRR073309Second white 11.534
CRR073310Second white 20.537
CRR073311Second white 31.055
CRR073312Silver flowering 12.387
CRR073313Silver flowering 22.369
CRR073314Silver flowering 31.999
CRR073315Gold flowering 11.149
CRR073316Gold flowering 21.524
CRR073317Gold flowering 30.527
CRR073318Tawny withering 18.260
CRR073319Tawny withering 27.354
CRR073320Tawny withering 312.737