Detail information of GWHGAAZE023590


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006361250.10PREDICTED: disease resistance protein RPM1-like [Solanum tuberosum]
COGYP_007072967.10.000000001small GTP-binding protein
Swissprottr|Q39214|RPM1_ARATH0Disease resistance protein RPM1
trEMBLtr|M1BL12|M1BL12_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400047578}
TAIR10AT3G07040.13E-167NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene1600155316005269-
GWHAAZE00000007mRNA1600155316005269-
GWHAAZE00000007exon1600155316003846-
GWHAAZE00000007exon1600484316005269-
GWHAAZE00000007CDS1600484316005269-
GWHAAZE00000007CDS1600155316003846-
Transcript Sequence

Network for GWHGAAZE023590

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF18052.2Rx_N15858.20E-16
PF00931.23NB-ARC1784221.80E-62
PF13855.7LRR_85846402.30E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K13457RPM1, RPS3 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.292
SRR3591706second leaf7.254
SRR3591707mature leaf7.624
SRR3591708Shoot apex4.590
SRR3591709Stem3.752
SRR3591710White floral bud0.369
SRR3591711White flower0.173
SRR3591712Green floral bud0.693
SRR3591713Yellow flower0.104
SRP173429 SRR8316895Juvenile bud stage 1.517
SRR8316896Juvenile bud stage 1.051
SRR8316897Juvenile bud stage 0.744
SRR8316894Third green stage 0.746
SRR8316900Third green stage 1.751
SRR8316901Third green stage 1.482
SRR8316898Complete white stage 0.111
SRR8316899Complete white stage 1.574
SRR8316903Complete white stage 0.131
SRR8316902Silver flowering stage0.162
SRR8316904Silver flowering stage0.138
SRR8316905Silver flowering stage0.163
SRR8316906Gold flowering stage 0.117
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.373
SRP132670SRR6706286Control0.336
SRR6706287Light intensity 50%0.550
SRR6706288Light intensity 20%0.789
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.414
CNS0095593Slightly white alabastrum(diploid) 20.768
CNS0095594Slightly white alabastrum(diploid) 30.370
CNS0095595Whole white alabastrum(diploid) 20.928
CNS0095596Whole white alabastrum(diploid) 31.010
CNS0095597Whole white alabastrum(diploid) 40.658
CNS0095598Silvery flower (diploied) 10.965
CNS0095599Silvery flower (diploied) 20.798
CNS0095600Silvery flower (diploied) 30.461
CNS0095601Golden flower (diploid) 10.530
CNS0095602Golden flower (diploid) 20.125
CNS0095603Golden flower (diploid) 30.242
CNS0095604Slightly white alabastrum(tetraploid) 10.447
CNS0095605Slightly white alabastrum(tetraploid) 20.629
CNS0095606Slightly white alabastrum(tetraploid) 32.528
CNS0095607Whole white alabastrum(tetraploid) 10.393
CNS0095608Whole white alabastrum(tetraploid) 20.198
CNS0095609Whole white alabastrum(tetraploid) 30.439
CNS0095610Silvery flower (tetraploid) 10.099
CNS0095611Silvery flower (tetraploid) 20.190
CNS0095612Silvery flower (tetraploid) 30.051
CNS0095613Golden flower (tetraploid) 10.066
CNS0095614Golden flower (tetraploid) 20.066
CNS0095615Golden flower (tetraploid) 30.167
CRA001975CRR073297Stem 11.744
CRR073298Stem 21.100
CRR073299Stem 30.503
CRR073300Leaf 10.868
CRR073301Leaf 20.912
CRR073302Leaf 30.258
CRR073303Juvenile bud 10.336
CRR073304Juvenile bud 20.256
CRR073305Juvenile bud 30.418
CRR073306Third green 10.441
CRR073307Third green 20.402
CRR073308Third green 30.400
CRR073309Second white 10.029
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.037
CRR073316Gold flowering 20.566
CRR073317Gold flowering 30.203
CRR073318Tawny withering 10.809
CRR073319Tawny withering 20.780
CRR073320Tawny withering 31.094