Gene detail

Detail information of GWHGAAZE023587

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007199343.1	0	hypothetical protein PRUPE_ppa024644mg [Prunus persica]
COG	YP_007069965.1	0.000000004	small GTP-binding protein
Swissprot	tr\|Q39214\|RPM1_ARATH	2E-134	Disease resistance protein RPM1
trEMBL	tr\|M5VHS4\|M5VHS4_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ00542.1}
TAIR10	AT3G07040.1	5E-119	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	15786872	15790881	-
GWHAAZE00000007	mRNA	15786872	15790881	-
GWHAAZE00000007	exon	15786872	15788184	-
GWHAAZE00000007	exon	15788275	15788346	-
GWHAAZE00000007	exon	15788509	15788791	-
GWHAAZE00000007	exon	15788946	15789211	-
GWHAAZE00000007	exon	15790455	15790881	-
GWHAAZE00000007	CDS	15790455	15790881	-
GWHAAZE00000007	CDS	15788946	15789211	-
GWHAAZE00000007	CDS	15788509	15788791	-
GWHAAZE00000007	CDS	15788275	15788346	-
GWHAAZE00000007	CDS	15786872	15788184	-

Transcript Sequence
>GWHTAAZE023617 ATGGAGCTAGTTAGTGTGGAGTTCACTATACTGAGCATCAATTCTATTCTCAAGAAGAAATTCTTGATCACCGGAATTTGCCACGAAATTAGAGAGTTGAAGTTGGAGCTTCAGGGTATGAAATCGTTTCTTAGAGTTGCTAACAAGTGCAACATTAATGACCAAAACGAGTTGTTCGATTTCTGGGTGTCACAAGTACAAGACATGGCATATAAAGTTGAGGATGCTATTGACGAGTTCGTGTATCATGTGGAACACATAAGAGGACGGGATGGGCATTTGAAGGGTTTTTTCCACAGATTCCTTCATTTTCCGGAAGAGATATACGTGAGGTTTTTCACAGCCATCAAATTTTGCCGGATCAAAGCCGAGATCAAAGAGATTGCACTGAGAAACAAGCGATATGATCTTGGTCATATAGAAGAAGGTTCGAGATCTGATACCACTCCCCTGTGGGTACAAAATATCGAGGAATCATCTTACTTTTTCGAGGAAAATGAAGTTGTGGGGAAGGAGCGGGAAAGAAGTATGTTGCTAAGGTGGTTGATGGATGAAGAACCCCAACGCGCAGTCGTTTCAGTACTGGGGATGGGCGGTTTAGGAAAGACAACACTAGTTGCTAATGCTTACAAAGACCACGAAGTGAAGCGTTTTTTCGATTGTTCTGCTTGGATTACCATCTCTCAAAACTACATAAATGTTGCACTTCCAAATGGTAAAAATGGAAGTCGAGTCATACTAACAACTAGAAAGGAAGATGTAGCGATGTACCCGTTTGGGGTTAGAAGCCATGTCCTCCACTCTCAACCACTTACAGAGGATCAGGCTTGGACCCTTTTTTGCAACAAGACCTTTTCTAATGAACATGAGAAAGCTTGTCCTCCGGATTTAAAAGATATAGCTAGGGACATGGTTAAGAAATGTGAAGGACTACCACTAGCAATTGTGGCTTTAGGGGATCTTATGGCATCCAAAGGAGATTACTGGGTTGGAGGTGGTAGACTCATTAGATTGTGGGTGGCCGAAGGTTTTGTGGAAGAAAGAAAAGGCTCCAAAAAGTGCCGACTCCACGATCTTATGAGAGAGCTTGCGCTTTCAATATCCGACAAGTTGAATTTCAGTTCCATATATGACGTACAAGCTGGAATAGAAGATGATAGAAGACCACGCCGCTTAAGCCTATTTCACCCTTTGGATGACAATACAACCTCCTTTCCCCCTAATATGGCACATGTTCGCTCTTTTGCTGCTTTCAACATTTGCCAAAACTCCACCTTGTCTTGGGATTCTTTGTTATCTAGTTTTAAGTTATTGAGGGTCTTGGAGTTGAATGAAGCACCAATAGATCATGTACCCACAACTATTGGGAAGTTATTCAACTTAAGATACTTGAATTTGAGTAGAACGGGTATAAAGGATCTTCCAGAATCAATGTGGAGACTACAAAATTTACAGACATTGGATATTAGGGAAACATGTATTGAAGAGCTTCCTAGTGGAATACATAGGTTGTGTAATATGCGTCATTTACTGACATATCGCACTGGTGGAAAGGAAGAATTTCAGTATATAATAGGAAAGCGAGTATCATCTACTATTTCAAAGTTGAAAAATCTCCAAGTCCTAAATTGCATTGAAGCAAATTATGAGATTATTAAGAGAATCTCGAAATTGACTCAACTCAAAAGGATTGAGCTTACAAACGTGAGGGAAACAGATGGGATTGAGTTGTGTGCCTCAATCGGAAAAATGAAACTCCTTCGCCACCTACTTGTAATGGCAACTAATGAGAACGAATTCGTCGCCCTGGATGCTTTACCACAATCATCAGCTCCTACGGTTCTTCGAAAGCTAACTTTAGTGGGAAGATTGAAAAGAGTGCCTTCTTGGTTTCCTTCACTTCGCAATATAATTTATTTGCATTTGCATTGGAGCCAAGTGGCGGAGGAAGACCCTATTCAGTATATAAATGGGTTACCCAATTTAGAGCACCTCGCTTTGGTGAATGCATATGACCGTGGGAAGGTAAAATTGTGCTTCTACGAAGGATTCCCTGAACTTCAAGACTTGTTCCTTGTTATTTTTCATGATTTGGGCGAAATAATAATTGCTAATGGAGTAATACCAAGTCTTGTACGCATGAAGCTACATGTTTGTGGTGAACTGAAGAAGGTGCCTCGGGGCATTGAACACCTCGCCAAGCTTGGAGAATTGGACCTGAAAGACGTTTCAGATGAACTAATCGATAGCATTCGAGGAGAACAAAGTGTTGATTATGCCAAGGTAAAGCACATCCCAGCGATCAATCATTCTTACAAGATTGATGGAAGATATGAGTATGAAAGCTTATCCCGGGCATAA

Network for GWHGAAZE023587

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18052.2	Rx_N	9	88	2.40E-13
PF00931.23	NB-ARC	177	231	2.70E-13
PF00931.23	NB-ARC	232	325	7.50E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13457	RPM1, RPS3	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.049
	SRR3591706	second leaf	5.654
	SRR3591707	mature leaf	22.151
	SRR3591708	Shoot apex	0.109
	SRR3591709	Stem	0.047
	SRR3591710	White floral bud	0.006
	SRR3591711	White flower	0.062
	SRR3591712	Green floral bud	0.007
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.002
	SRR8316897	Juvenile bud stage	0.012
	SRR8316894	Third green stage	0.003
	SRR8316900	Third green stage	0.003
	SRR8316901	Third green stage	0.003
	SRR8316898	Complete white stage	0.044
	SRR8316899	Complete white stage	0.010
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.052
	SRR8316905	Silver flowering stage	0.065
	SRR8316906	Gold flowering stage	0.149
	SRR8316907	Gold flowering stage	0.238
	SRR8316908	Gold flowering stage	0.051
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.002
	SRR6706288	Light intensity 20%	0.001
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.004
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.001
	CNS0095600	Silvery flower (diploied) 3	0.018
	CNS0095601	Golden flower (diploid) 1	0.052
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.008
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.008
	CNS0095610	Silvery flower (tetraploid) 1	0.002
	CNS0095611	Silvery flower (tetraploid) 2	0.002
	CNS0095612	Silvery flower (tetraploid) 3	0.004
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	0.003
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.004
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.012
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.018
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.072
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.002
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.064
	CRR073311	Second white 3	0.075
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.010
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.036
	CRR073316	Gold flowering 2	0.057
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000