Gene detail

Detail information of GWHGAAZE023553

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11762.1	0	unnamed protein product [Coffea canephora]
COG	YP_001655687.1	3E-11	chaperon-like protein for quinone binding in photosystem II
Swissprot	tr\|P52581\|IFRH_LUPAL	6E-174	Isoflavone reductase homolog
trEMBL	tr\|A0A068UTZ8\|A0A068UTZ8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_59 {ECO:0000313\|EMBL:CDP11762.1}
TAIR10	AT1G32100.1	2E-125	pinoresinol reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	13391648	13395778	-
GWHAAZE00000007	mRNA	13391648	13395778	-
GWHAAZE00000007	exon	13391648	13391811	-
GWHAAZE00000007	exon	13392744	13392947	-
GWHAAZE00000007	exon	13393666	13393906	-
GWHAAZE00000007	exon	13395443	13395778	-
GWHAAZE00000007	CDS	13395443	13395778	-
GWHAAZE00000007	CDS	13393666	13393906	-
GWHAAZE00000007	CDS	13392744	13392947	-
GWHAAZE00000007	CDS	13391648	13391811	-

Transcript Sequence
>GWHTAAZE023583 ATGACAATTGAAAGAAGAAAGGTTCTTGTTGTGGGGGGCACTGGTTATCTTGGTAGGAGAATTGTTAAGGCTTGTTTGGCACAAGGACACACAACTTATGTCCTTCAACGCCGAGAAATTGGGCTTGACATTGAGAAATTACAGATGTTGTTGTCGTTCAAGGCGCAGGGAGCTCGGCTAGTTGAAGGTTCATTTTCGGACCACAAGAGCATTGTGGAGGCTGTGAAGCAAGTCGACGTGGTGGTTTGCGCCATGTCCGGCGTGCATTTTCGCAGTCATAATATTCTCGTGCAGCTAATGCTTGTTGATGCAATCAAAGAAGCCGGAAATATTAAGCAATTCTTTCCATCTGAATTTGGCATGGACCCTGCAAGAATGGGAGATGCACTTGAGCCAGGAAGAGTAACATTTGATGAGAAAATGGTAGTAAGAAAGGCTATTGAAGAAGCTAAAATCCCTTACACTTATGTGTGTGGTGCTTGCTTTGCTGGTTACTTTGCTGGTAACCTTTCTCAATTTGGCTCCCTTGTTCCCCCCAGAGACAAAGTCTACCTATATGGGGATGGTAATGTTAAAGTGATCATTATGGATGAAGATGATATTGCAACATACACCGTGAAAGCTATAGGTGATTATCGCGCATTAAACAAAACTTTGTACCTTCGCCCATGGGTAAACAACATTTCTCAAACGGAACTGGTTGAGAAGTGGGAAAATCTACTCGGGAAAAAGTTAGAGAAAATAAGCATCTCTGCCGAAGACTTTCTGGCTTCCATGAGAGGAATGGACTTGGCTTCCCAAGTGGGTGTGGGGCATTTTTATCACATATTTTATGAAGGTTGTTTGACAAACTTTGAAGCAGGGGAAAATGAAGAAGAAGTGTCTGAGTTGTACCCAGAGGTTCAGTGCACTAGCATGGAGACATACCTCAAACGCTATCTTTAA

Network for GWHGAAZE023553

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05368.14	NmrA	8	244	1.00E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21568	PLR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of various secondary metabolites - part 2	map00998

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.105
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.320
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	3.920
	SRR3591710	White floral bud	0.321
	SRR3591711	White flower	15.311
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	248.344
SRP173429	SRR8316895	Juvenile bud stage	0.801
	SRR8316896	Juvenile bud stage	0.793
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.179
	SRR8316900	Third green stage	0.540
	SRR8316901	Third green stage	0.563
	SRR8316898	Complete white stage	0.224
	SRR8316899	Complete white stage	0.249
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.078
	SRR8316904	Silver flowering stage	0.255
	SRR8316905	Silver flowering stage	0.561
	SRR8316906	Gold flowering stage	9.737
	SRR8316907	Gold flowering stage	19.641
	SRR8316908	Gold flowering stage	16.503
SRP132670	SRR6706286	Control	0.622
	SRR6706287	Light intensity 50%	0.523
	SRR6706288	Light intensity 20%	0.623
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.155
	CNS0095593	Slightly white alabastrum(diploid) 2	0.044
	CNS0095594	Slightly white alabastrum(diploid) 3	0.195
	CNS0095595	Whole white alabastrum(diploid) 2	0.049
	CNS0095596	Whole white alabastrum(diploid) 3	0.463
	CNS0095597	Whole white alabastrum(diploid) 4	0.246
	CNS0095598	Silvery flower (diploied) 1	0.146
	CNS0095599	Silvery flower (diploied) 2	0.075
	CNS0095600	Silvery flower (diploied) 3	1.342
	CNS0095601	Golden flower (diploid) 1	1.112
	CNS0095602	Golden flower (diploid) 2	15.261
	CNS0095603	Golden flower (diploid) 3	14.136
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.382
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.047
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.070
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.717
	CNS0095610	Silvery flower (tetraploid) 1	3.270
	CNS0095611	Silvery flower (tetraploid) 2	2.209
	CNS0095612	Silvery flower (tetraploid) 3	2.713
	CNS0095613	Golden flower (tetraploid) 1	14.621
	CNS0095614	Golden flower (tetraploid) 2	14.039
	CNS0095615	Golden flower (tetraploid) 3	8.524
CRA001975	CRR073297	Stem 1	0.050
	CRR073298	Stem 2	0.299
	CRR073299	Stem 3	0.235
	CRR073300	Leaf 1	0.133
	CRR073301	Leaf 2	0.158
	CRR073302	Leaf 3	0.254
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.053
	CRR073307	Third green 2	0.048
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	1.396
	CRR073310	Second white 2	2.024
	CRR073311	Second white 3	2.319
	CRR073312	Silver flowering 1	10.025
	CRR073313	Silver flowering 2	6.506
	CRR073314	Silver flowering 3	11.310
	CRR073315	Gold flowering 1	0.129
	CRR073316	Gold flowering 2	0.725
	CRR073317	Gold flowering 3	0.817
	CRR073318	Tawny withering 1	16.831
	CRR073319	Tawny withering 2	2.727
	CRR073320	Tawny withering 3	32.968