Gene detail

Detail information of GWHGAAZE023431

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009799715.1	0	PREDICTED: F-box protein At1g47056-like [Nicotiana sylvestris]
Swissprot	tr\|Q9S9X4\|FBL8_ARATH	0	Putative F-box/LRR-repeat protein 8
trEMBL	tr\|Q84QE1\|Q84QE1_TOBAC	0	Avr9/Cf-9 rapidly elicited protein 189 {ECO:0000313\|EMBL:AAP03878.1}
TAIR10	AT4G07400.1	6E-148	VIER F-box proteine 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8311172	8312859	-
GWHAAZE00000007	mRNA	8311172	8312859	-
GWHAAZE00000007	exon	8311172	8312025	-
GWHAAZE00000007	exon	8312145	8312859	-
GWHAAZE00000007	CDS	8312145	8312859	-
GWHAAZE00000007	CDS	8311172	8312025	-

Transcript Sequence
>GWHTAAZE023461 ATGGGACAATCATCTTCCTCTTCAGGCTCAATCCACCGGACTTACAACCGTTCAGTCTCCAGATCGGAGATCCTATCCGTCATCCACTCCAATAGAGGTAATCTGAATATGAAAATGAAAACAGATGCAAATAGTGAAGCTAATAATAATAAAAATATTAATAATACAGAAGTTGTTACAGATGCTAATGCTAATGCTAATGATGATTATGATTATATATCCGAGATTCCGGATGAGTGTTTAGCTATCATTTTCCAATCACTTAGCGCCGGCGACAGGAAACGATGCTCGCTCGTTTCCCGTCGGTGGCTGGTTGTGGAGGGGCAGAGCCGGCAGCGGCTGGCCCTGAACGCCAAATCGGAGCTCCTCCCTCTCGTTCCGCCTCTATTTACTCGATTCGATTCGGTTACGAAGCTAGCGCTTCGATGTGACCGTAGATCTGTTAGTATCAACGACGATGCTCTTATTTTGATCTCTCTCCGGTGCCCGAATCTCACGCGCCTCAAGCTCCGTGGTTGCCGCGAGCTAACCGATATTGGAATGGCTGCTTTTGCTTTAAACTGTAAGGGTTTGAAGAAGTTTTCGTGTGGATCTTGTTTGTTTGGGGCTAAAGGAATGAACGCTGTGTTAGATCACTGCGCTTTTCTCGAGGAACTTTCGGTAAAGCGCCTCCGAGGGATTAATGATGGTGGTGCTGCTGAGCAGATTGGCCCTGGTGACTGGGATAAGATTTTGGAAAATATTGCAACTAGAGAGAATTCTTTGTTTGAGATCCATTTAGAGAGGCTTCAGGTGAGTGATGATGGGCTTTCAGCTATATCGAATTGTTCCAATTTGGAGATTTTACATATTGTCAAGACACCAGAGTGTTCAAATGTTGGAATTGTGGCCATAGCCGAGCAGTGTAAGCTATTAAGGAAGCTTCATATCGACGGTTGGAGGACGAATAGAATAGGAAACGAAGGGCTAATTGCCATTGCTAAACATAGTTCCAACCTTCAAGAATTGGTTCTGATTGGGGTTAATCCAAGTTCTATTAGTCTTGAAGCCATTGCTTCAAATTGCCAAAAACTGGAGCGGTTGGCGCTTTGTGGTAGTGAGACAATTGCTGATGCGGAGATTTCTTGCATTGCAGCAAAATGCATGGCATTGAAGAAGCTCTGCATCAAGGGGTGCCCTGTATCGGACCAGGGTATAGAAGCTTTTGCTTGGGGTTGCCCTAATTTGGTGAAGATTAAGGTCAAAAAGTGTAGGGCAGTGACTAGTGAAGTTTCAGATTGGTTGAGGTCGAGAAGAGGATCGTTGGTGGTCAATTTGGATATTTGTGGGGTTGAAGGGGAAGTGGTGGATGCTAGCGCAAGTGATAGTGGTGCACAAGAGGATGGTGTGGAGTTCCCGCCGATAGGGAGCCGATCAACGGCTGTGGATGCTGATGCTACAACCACCAGCAATGGCCGATCATCATCGGTGTTCAAATCAAGATTCGGCCTTTTCGGAGGTAGAAGTTTTGTAGCTTGCACTTTCAGAAGGTGGTCTGGTGGTACTAGTAGCTTCAATGGTAGCTCGTGA

Network for GWHGAAZE023431

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	73	103	2.40E-06
PF13516.7	LRR_6	162	185	0.091

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.442
	SRR3591706	second leaf	7.617
	SRR3591707	mature leaf	7.419
	SRR3591708	Shoot apex	15.865
	SRR3591709	Stem	45.104
	SRR3591710	White floral bud	21.464
	SRR3591711	White flower	28.932
	SRR3591712	Green floral bud	16.574
	SRR3591713	Yellow flower	36.215
SRP173429	SRR8316895	Juvenile bud stage	17.557
	SRR8316896	Juvenile bud stage	9.515
	SRR8316897	Juvenile bud stage	15.777
	SRR8316894	Third green stage	6.722
	SRR8316900	Third green stage	13.120
	SRR8316901	Third green stage	14.855
	SRR8316898	Complete white stage	6.244
	SRR8316899	Complete white stage	22.533
	SRR8316903	Complete white stage	7.878
	SRR8316902	Silver flowering stage	5.607
	SRR8316904	Silver flowering stage	7.040
	SRR8316905	Silver flowering stage	4.604
	SRR8316906	Gold flowering stage	23.063
	SRR8316907	Gold flowering stage	16.645
	SRR8316908	Gold flowering stage	35.703
SRP132670	SRR6706286	Control	7.756
	SRR6706287	Light intensity 50%	9.233
	SRR6706288	Light intensity 20%	9.069
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.976
	CNS0095593	Slightly white alabastrum(diploid) 2	15.177
	CNS0095594	Slightly white alabastrum(diploid) 3	13.414
	CNS0095595	Whole white alabastrum(diploid) 2	10.949
	CNS0095596	Whole white alabastrum(diploid) 3	6.854
	CNS0095597	Whole white alabastrum(diploid) 4	7.079
	CNS0095598	Silvery flower (diploied) 1	22.626
	CNS0095599	Silvery flower (diploied) 2	17.387
	CNS0095600	Silvery flower (diploied) 3	20.264
	CNS0095601	Golden flower (diploid) 1	20.869
	CNS0095602	Golden flower (diploid) 2	28.281
	CNS0095603	Golden flower (diploid) 3	26.494
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.594
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.592
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.999
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.827
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.346
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.079
	CNS0095610	Silvery flower (tetraploid) 1	14.405
	CNS0095611	Silvery flower (tetraploid) 2	9.185
	CNS0095612	Silvery flower (tetraploid) 3	26.415
	CNS0095613	Golden flower (tetraploid) 1	19.823
	CNS0095614	Golden flower (tetraploid) 2	19.060
	CNS0095615	Golden flower (tetraploid) 3	21.327
CRA001975	CRR073297	Stem 1	10.484
	CRR073298	Stem 2	11.418
	CRR073299	Stem 3	12.510
	CRR073300	Leaf 1	20.868
	CRR073301	Leaf 2	26.392
	CRR073302	Leaf 3	21.945
	CRR073303	Juvenile bud 1	20.189
	CRR073304	Juvenile bud 2	17.950
	CRR073305	Juvenile bud 3	33.731
	CRR073306	Third green 1	21.408
	CRR073307	Third green 2	17.119
	CRR073308	Third green 3	19.905
	CRR073309	Second white 1	17.308
	CRR073310	Second white 2	20.175
	CRR073311	Second white 3	22.131
	CRR073312	Silver flowering 1	44.455
	CRR073313	Silver flowering 2	44.942
	CRR073314	Silver flowering 3	39.106
	CRR073315	Gold flowering 1	4.750
	CRR073316	Gold flowering 2	10.778
	CRR073317	Gold flowering 3	8.404
	CRR073318	Tawny withering 1	14.412
	CRR073319	Tawny withering 2	25.875
	CRR073320	Tawny withering 3	19.847