Detail information of GWHGAAZE023430


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02534.10unnamed protein product [Coffea canephora]
Swissprottr|A3KPE8|SDN1_ARATH4E-143Small RNA degrading nuclease 1
trEMBLtr|A0A068U2Z7|A0A068U2Z7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02534.1}
TAIR10AT5G67240.12E-118small RNA degrading nuclease 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene82988538304496-
GWHAAZE00000007mRNA82988538304496-
GWHAAZE00000007exon83044108304496-
GWHAAZE00000007exon83036258303804-
GWHAAZE00000007exon83034228303511-
GWHAAZE00000007exon83031298303197-
GWHAAZE00000007exon83018518301991-
GWHAAZE00000007exon83016398301755-
GWHAAZE00000007exon83014948301563-
GWHAAZE00000007exon83011968301302-
GWHAAZE00000007exon83005718300705-
GWHAAZE00000007exon83003868300490-
GWHAAZE00000007exon82999238300027-
GWHAAZE00000007exon82988538299388-
GWHAAZE00000007CDS83044108304496-
GWHAAZE00000007CDS83036258303804-
GWHAAZE00000007CDS83034228303511-
GWHAAZE00000007CDS83031298303197-
GWHAAZE00000007CDS83018518301991-
GWHAAZE00000007CDS83016398301755-
GWHAAZE00000007CDS83014948301563-
GWHAAZE00000007CDS83011968301302-
GWHAAZE00000007CDS83005718300705-
GWHAAZE00000007CDS83003868300490-
GWHAAZE00000007CDS82999238300027-
GWHAAZE00000007CDS82990688299388-
GWHAAZE00000007three_prime_UTR82988538299067-
Transcript Sequence

Network for GWHGAAZE023430

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00929.25RNase_T1633138.70E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14570REX1, REXO1, RNH70 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.482
SRR3591706second leaf1.424
SRR3591707mature leaf0.753
SRR3591708Shoot apex3.225
SRR3591709Stem0.146
SRR3591710White floral bud0.608
SRR3591711White flower0.420
SRR3591712Green floral bud2.325
SRR3591713Yellow flower0.195
SRP173429 SRR8316895Juvenile bud stage 2.303
SRR8316896Juvenile bud stage 2.614
SRR8316897Juvenile bud stage 2.203
SRR8316894Third green stage 1.240
SRR8316900Third green stage 2.285
SRR8316901Third green stage 2.409
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 1.571
SRR8316903Complete white stage 0.553
SRR8316902Silver flowering stage0.030
SRR8316904Silver flowering stage0.210
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.260
SRR8316907Gold flowering stage 0.073
SRR8316908Gold flowering stage 0.284
SRP132670SRR6706286Control0.748
SRR6706287Light intensity 50%1.032
SRR6706288Light intensity 20%1.742
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.100
CNS0095593Slightly white alabastrum(diploid) 24.078
CNS0095594Slightly white alabastrum(diploid) 32.135
CNS0095595Whole white alabastrum(diploid) 22.461
CNS0095596Whole white alabastrum(diploid) 31.786
CNS0095597Whole white alabastrum(diploid) 41.677
CNS0095598Silvery flower (diploied) 10.859
CNS0095599Silvery flower (diploied) 21.545
CNS0095600Silvery flower (diploied) 30.211
CNS0095601Golden flower (diploid) 10.857
CNS0095602Golden flower (diploid) 20.641
CNS0095603Golden flower (diploid) 30.273
CNS0095604Slightly white alabastrum(tetraploid) 12.251
CNS0095605Slightly white alabastrum(tetraploid) 22.440
CNS0095606Slightly white alabastrum(tetraploid) 32.393
CNS0095607Whole white alabastrum(tetraploid) 13.121
CNS0095608Whole white alabastrum(tetraploid) 21.076
CNS0095609Whole white alabastrum(tetraploid) 32.374
CNS0095610Silvery flower (tetraploid) 10.145
CNS0095611Silvery flower (tetraploid) 20.243
CNS0095612Silvery flower (tetraploid) 30.664
CNS0095613Golden flower (tetraploid) 10.032
CNS0095614Golden flower (tetraploid) 20.062
CNS0095615Golden flower (tetraploid) 30.059
CRA001975CRR073297Stem 12.039
CRR073298Stem 22.740
CRR073299Stem 33.484
CRR073300Leaf 12.481
CRR073301Leaf 21.594
CRR073302Leaf 31.642
CRR073303Juvenile bud 11.609
CRR073304Juvenile bud 21.219
CRR073305Juvenile bud 31.431
CRR073306Third green 10.022
CRR073307Third green 20.103
CRR073308Third green 30.000
CRR073309Second white 10.136
CRR073310Second white 20.184
CRR073311Second white 30.092
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.036
CRR073315Gold flowering 10.241
CRR073316Gold flowering 20.622
CRR073317Gold flowering 30.459
CRR073318Tawny withering 11.017
CRR073319Tawny withering 21.339
CRR073320Tawny withering 31.588