Gene detail

Detail information of GWHGAAZE023420

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011014880.1	1.0688E-83	PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
Swissprot	tr\|O22187\|Y2232_ARATH	6E-48	Probable receptor-like protein kinase At2g23200 (Precursor)
trEMBL	tr\|M0TMD5\|M0TMD5_MUSAM	4E-84	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P03820_001}
TAIR10	AT2G23200.1	4E-41	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7893639	7894991	-
GWHAAZE00000007	mRNA	7893639	7894991	-
GWHAAZE00000007	exon	7894367	7894991	-
GWHAAZE00000007	exon	7893639	7894102	-
GWHAAZE00000007	CDS	7894367	7894991	-
GWHAAZE00000007	CDS	7893639	7894102	-

Transcript Sequence
>GWHTAAZE023450 ATGGAGATAATGAAGGATTTGCCCATGTTTGATCCAAGAGAATCGATGAAGAAAAAGAATAGAGTGTTTGTAATAATTGGCTCTGCTTTTGGGGGCGTGGTGTTCTTGATTTTGCTGCTGGTGGTGTTGTTTTGGTTGAAATGCAGAAGAGCTAAGCCTGTCGATAGTTTTGATCGGCCATTAGTTCTTGCATATGGAAGAAGTTCATATGGTACTGTTAGTTCAAGAAATGTTAATGCCTCTCCCGGTACTGTAAATCTTGGGTTGAAGCTAAATTTTGATGAAATTTTATATGCAACAAATGGTTTCGATCCAAAGTTGATGATTGGCGAGGGCGGGTTTGGGAAAGTGTACAAAGGGACTCTTCGAATTGGAACAAAAGTGGCTGTGAAACGGAGTGAACCAGGGCATGGACAAGGCCTATCCGAGTTCAAAACAGAAATAATGGTTTTGTCAAAGATTCTCTATATCCATCTAGTTTCTTTAATCGGGTACTGTGACGAAAGATCAGAGATGATATTGGTTTATGAGTTTATGGAGAAAGGGACATTAAGAGAGCATTTGTATAGCTCTAATAATCAAGAATCCAAATTGTCTTGGAACAAAAGGCTTGAAATTTGTATAGTGCTATGCGCTAGGCCAGCTATTAACAACTTGCTCCCTCATGATGAAGCGAATTTGGCCGATTGGGGGATTTCTCGGCAAAAGATGGGGGAACTCGAGAAGATCGTTGATCCTTTTCTTGAGGGTAAGATTAATCCGAATTCTTTGAGGAAATTCGGGGAGACGGTGGAGAAGTGTTTGAGGGAATCCGGTGTCGAGAGGCCTAGTATGGTTGATGTAATGTGGGATTTGGAGTATGCATTTCAACTTCAACAAACACATGTGGTGAGAGAGCCACATGAGGATAGTACTACCACTACAAATGAATATTCTTGGGGTCAATTTGCAATGCCTCTTGGAATTAATCCTTTGGATTCTCAAAGCATCGCAATTGAAGAAGATTATTTAACAAGTGAGGTTTCAAGTACAAGTTTTGGAAATGCAAGTGGAGTGTTTTCACATTTGAAGGTTGATGATTCAAGGTGA

Network for GWHGAAZE023420

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	108	210	1.20E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.112
	SRR3591706	second leaf	1.348
	SRR3591707	mature leaf	3.918
	SRR3591708	Shoot apex	0.944
	SRR3591709	Stem	3.203
	SRR3591710	White floral bud	0.176
	SRR3591711	White flower	0.865
	SRR3591712	Green floral bud	0.354
	SRR3591713	Yellow flower	0.174
SRP173429	SRR8316895	Juvenile bud stage	0.219
	SRR8316896	Juvenile bud stage	0.207
	SRR8316897	Juvenile bud stage	0.099
	SRR8316894	Third green stage	0.045
	SRR8316900	Third green stage	0.184
	SRR8316901	Third green stage	0.032
	SRR8316898	Complete white stage	0.014
	SRR8316899	Complete white stage	0.232
	SRR8316903	Complete white stage	0.111
	SRR8316902	Silver flowering stage	0.040
	SRR8316904	Silver flowering stage	0.016
	SRR8316905	Silver flowering stage	0.074
	SRR8316906	Gold flowering stage	0.132
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.222
SRP132670	SRR6706286	Control	0.210
	SRR6706287	Light intensity 50%	0.168
	SRR6706288	Light intensity 20%	0.109
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.066
	CNS0095593	Slightly white alabastrum(diploid) 2	0.076
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.100
	CNS0095596	Whole white alabastrum(diploid) 3	0.248
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.320
	CNS0095599	Silvery flower (diploied) 2	0.050
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.074
	CNS0095602	Golden flower (diploid) 2	0.366
	CNS0095603	Golden flower (diploid) 3	0.149
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.091
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.035
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.475
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.087
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.021
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.051
	CNS0095610	Silvery flower (tetraploid) 1	0.133
	CNS0095611	Silvery flower (tetraploid) 2	0.096
	CNS0095612	Silvery flower (tetraploid) 3	0.144
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.073
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.126
	CRR073298	Stem 2	0.207
	CRR073299	Stem 3	0.038
	CRR073300	Leaf 1	0.110
	CRR073301	Leaf 2	0.154
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.060
	CRR073304	Juvenile bud 2	0.092
	CRR073305	Juvenile bud 3	0.103
	CRR073306	Third green 1	0.076
	CRR073307	Third green 2	0.127
	CRR073308	Third green 3	0.020
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.036
	CRR073311	Second white 3	0.023
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.008
	CRR073316	Gold flowering 2	0.219
	CRR073317	Gold flowering 3	0.014
	CRR073318	Tawny withering 1	0.570
	CRR073319	Tawny withering 2	0.360
	CRR073320	Tawny withering 3	0.019